Pre_GI Gene

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Host: NC_009439 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009439:1297851 Pseudomonas mendocina ymp, complete genome

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
12969501297858909binding-protein-dependent transport systems inner membrane componentQuickGO ontologyBLASTP
12978511298729879binding-protein-dependent transport systems inner membrane componentQuickGO ontologyBLASTP
129874012998851146ABC transporter relatedQuickGO ontologyBLASTP
130000413012391236porin LamB typeQuickGO ontologyBLASTP
13012331302129897aldose 1-epimeraseQuickGO ontologyBLASTP
13027681303706939LysR family transcriptional regulatorQuickGO ontologyBLASTP
13038401304802963LysR family transcriptional regulatorQuickGO ontologyBLASTP
13051371306102966hypothetical proteinBLASTP
13065751306763189phage transcriptional regulator AlpAQuickGO ontologyBLASTP
13071241308068945hypothetical proteinBLASTP
13087121309512801cation diffusion facilitator family transporterQuickGO ontologyBLASTP
130984513114071563transposase IS66QuickGO ontologyBLASTP
13114271311786360IS66 Orf2 family proteinQuickGO ontologyBLASTP
13117831312130348hypothetical proteinBLASTP
131225513135681314phosphate-selective porin O and PQuickGO ontologyBLASTP
13139871314904918LysR family transcriptional regulatorQuickGO ontologyBLASTP
131497813163061329outer membrane porinQuickGO ontologyBLASTP
131665813179591302transposase IS204IS1001IS1096IS1165 family proteinQuickGO ontologyBLASTP
131846313198031341outer membrane porinQuickGO ontologyBLASTP
13198731320136264hypothetical protein
132091613223491434heavy metal sensor signal transduction histidine kinaseQuickGO ontologyBLASTP
13223461323020675two component heavy metal response transcriptional regulatorQuickGO ontologyBLASTP
132341713246671251outer membrane efflux proteinQuickGO ontologyBLASTP
132472513259901266RND family efflux transporter MFP subunitQuickGO ontologyBLASTP
132601313291593147CzcA family heavy metal efflux proteinQuickGO ontologyBLASTP
13293891330018630hypothetical protein
13301131330457345hypothetical proteinBLASTP
13305381330783246XRE family transcriptional regulatorQuickGO ontologyBLASTP
13308121331309498DNA repair protein RadCQuickGO ontologyBLASTP
13313511332247897hypothetical proteinBLASTP
133233613333401005Phage-related protein endonuclease-like proteinQuickGO ontologyBLASTP
13334271334395969hypothetical proteinBLASTP
13344881334814327hypothetical proteinBLASTP