Pre_GI Gene

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Host: NC_012668 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012668:83641 Vibrio cholerae MJ-1236 chromosome 1, complete sequence

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
83641849211281cell wall endopeptidase family M23M37QuickGO ontologyBLASTP
8653086979450transposaseQuickGO ontologyBLASTP
8695287440489transposaseQuickGO ontologyBLASTP
8921589655441ribonuclease HQuickGO ontologyBLASTP
8973789937201transcriptional regulatorQuickGO ontologyBLASTP
9000190600600hypothetical proteinBLASTP
9065491328675hypothetical proteinBLASTP
9241993294876hypothetical proteinBLASTP
93550947161167hypothetical proteinBLASTP
95222971831962hypothetical proteinBLASTP
97945997051761hypothetical proteinBLASTP
9967499820147hypothetical protein
999621010411080TRAP transporter solute receptorQuickGO ontologyBLASTP
1011021029341833glucosamine--fructose-6-phosphate aminotransferaseQuickGO ontologyBLASTP
102997103767771transcriptional regulator of glmS gene DeoR familyQuickGO ontologyBLASTP
1041951056071413pyruvate kinaseQuickGO ontologyBLASTP
106143106859717hypothetical proteinBLASTP
106939107835897chromosome replication initiation inhibitor proteinQuickGO ontologyBLASTP
108000108635636lysine efflux permeaseQuickGO ontologyBLASTP
108699109562864hypothetical proteinBLASTP
10957510967096hypothetical protein
1098581109341077fructose-bisphosphate aldolaseQuickGO ontologyBLASTP
1110901122681179phosphoglycerate kinaseQuickGO ontologyBLASTP
1124021134271026erythrose 4-phosphate dehydrogenaseQuickGO ontologyBLASTP