Pre_GI Gene

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Host: NC_010322 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_010322:5293652 Pseudomonas putida GB-1 chromosome, complete genome

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
529365252947971146L-lactate dehydrogenaseQuickGO ontologyBLASTP
529487352976832811D-lactate dehydrogenaseQuickGO ontologyBLASTP
52980035298293291hypothetical proteinBLASTP
529897753002331257integrase family proteinQuickGO ontologyBLASTP
53005755300904330hypothetical protein
53009765301944969hypothetical proteinBLASTP
530202153030251005phage-like protein endonuclease-like proteinQuickGO ontologyBLASTP
53031035304017915hypothetical proteinBLASTP
53040685304556489DNA repair protein RadCQuickGO ontologyBLASTP
530473253061261395restriction endonuclease EcoRIIQuickGO ontologyBLASTP
53064285306904477DNA mismatch endonuclease VsrQuickGO ontologyBLASTP
530691253082551344DNA cytosine methylaseQuickGO ontologyBLASTP
53083115308766456transposase-like protein TnpA3QuickGO ontologyBLASTP
53089005309745846HNH endonucleaseQuickGO ontologyBLASTP
530975353113661614hypothetical proteinBLASTP
53113815311794414hypothetical proteinBLASTP
531179753136981902non-specific serinethreonine protein kinaseQuickGO ontologyBLASTP
53139595314558600transposaseQuickGO ontologyBLASTP
53151075315289183phage transcriptional regulator AlpAQuickGO ontologyBLASTP
53158695316630762hypothetical proteinBLASTP
531789653211413246hypothetical proteinBLASTP
532114153228441704labile enterotoxin output AQuickGO ontologyBLASTP
53229045323161258hypothetical proteinBLASTP
53232815324156876transcriptional regulatorQuickGO ontologyBLASTP
532425553266482394TonB-dependent siderophore receptorQuickGO ontologyBLASTP