Pre_GI: BLASTP Hits

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Query: NC_010322:5293652:5298003 Pseudomonas putida GB-1 chromosome, complete genome

Start: 5298003, End: 5298293, Length: 291

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017986:1862408:186569318656931865983291Pseudomonas putida ND6 chromosome, complete genomehypothetical protein3e-28123
NC_002947:5386489:538961953896195389909291Pseudomonas putida KT2440, complete genomehypothetical protein2e-27120
NC_010501:734363:760750760750761043294Pseudomonas putida W619, complete genomehypothetical protein2e-27120
NC_008027:775896:791852791852792130279Pseudomonas entomophila L48, complete genomehypothetical protein3e-27120
NC_009434:3611738:361757736175773618020444Pseudomonas stutzeri A1501, complete genomehypothetical protein9e-1165.5
NC_005773:4797242:480394348039434804227285Pseudomonas syringae pv. phaseolicola 1448A, complete genomehypothetical protein7e-0855.8
NC_012660:5793200:579792557979255798203279Pseudomonas fluorescens SBW25 chromosome, complete genomehypothetical protein4e-0753.5
NC_020209:3874844:387996038799603880241282Pseudomonas poae RE*1-1-14, complete genomehypothetical protein1e-0652
NC_015379:908904:970816970816971106291Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Conserved hypothetical protein; putative exported protein3e-0650.4
NC_004129:926479:938775938775939062288Pseudomonas fluorescens Pf-5, complete genomehypothetical protein8e-0649.3