Pre_GI: BLASTP Hits

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Query: NC_010322:5293652:5311381 Pseudomonas putida GB-1 chromosome, complete genome

Start: 5311381, End: 5311794, Length: 414

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010814:243384:264287264287264712426Geobacter lovleyi SZ, complete genomehypothetical protein2e-31134
NC_009792:3225965:3233564323356432347661203Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein2e-0858.2
NC_010102:4745949:4756158475615847573661209Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-0857.8
NC_011750:2928990:2933379293337929345931215Escherichia coli IAI39 chromosome, complete genomeType-2 restriction enzyme EcoRII (R.EcoRII) (Type II restriction enzyme EcoRII) (Endonuclease EcoRII)1e-0755.1
NC_012214:3303955:3313524331352433147471224Erwinia pyrifoliae Ep1/96, complete genometype II restriction enzyme EcoRII5e-0753.1
NC_012779:1449500:1455981145598114572251245Edwardsiella ictaluri 93-146, complete genometype II restriction enzyme2e-0651.2