Pre_GI: BLASTN Hits

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Query: NC_010322:5293652 Pseudomonas putida GB-1 chromosome, complete genome

Start: 5293652, End: 5326648, Length: 32997

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_008027:77589677589680259926704Pseudomonas entomophila L48, complete genome04764BLASTN svgBLASTP svg
NC_010501:73436373436376909934737Pseudomonas putida W619, complete genome04591BLASTN svgBLASTP svg
NC_002947:53864895386489541416727679Pseudomonas putida KT2440, complete genome04201BLASTN svgBLASTP svg
NC_009512:51664595166459519343626978Pseudomonas putida F1, complete genome02722BLASTN svgBLASTP svg
NC_004129:92647992647994509918621Pseudomonas fluorescens Pf-5, complete genome01229BLASTN svgBLASTP svg
NC_012560:43504654350465437377923315Azotobacter vinelandii DJ, complete genome01086BLASTN svgBLASTP svg
NC_021150:43504614350461437377523315Azotobacter vinelandii CA6, complete genome01086BLASTN svgBLASTP svg
NC_009434:3611738*36117383748875137138Pseudomonas stutzeri A1501, complete genome0967BLASTN svgBLASTP svg
NC_015379:90890490890497110662203Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,1e-178634BLASTN svgBLASTP svg
NC_012660:57932005793200583260939410Pseudomonas fluorescens SBW25 chromosome, complete genome4e-148533BLASTN svgBLASTP svg
NC_015740:2407500*2407500244682739328Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete2e-143517BLASTN svgBLASTP svg
NC_007492:85742885742888733529908Pseudomonas fluorescens PfO-1, complete genome9e-143515BLASTN svgBLASTP svg
NC_020209:38748443874844390437229529Pseudomonas poae RE*1-1-14, complete genome3e-139504BLASTN svgBLASTP svg
NC_009512:15181131518113155588037768Pseudomonas putida F1, complete genome8e-137496BLASTN svgBLASTP svg
NC_015733:3736104*37361043837697101594Pseudomonas putida S16 chromosome, complete genome2e-122448BLASTN svgBLASTP svg
NC_015733:35958823595882362033824457Pseudomonas putida S16 chromosome, complete genome2e-122448BLASTN svgBLASTP svg
NC_009439:12978511297851133481436964Pseudomonas mendocina ymp, complete genome2e-122448BLASTN svgBLASTP svg
NC_015733:42539614253961427610922149Pseudomonas putida S16 chromosome, complete genome3e-121444BLASTN svgBLASTP svg
NC_011770:2499432*2499432255697257541Pseudomonas aeruginosa LESB58, complete genome4e-120440BLASTN svgBLASTP svg
NC_007005:49927304992730502132828599Pseudomonas syringae pv. syringae B728a, complete genome2e-119438BLASTN svgBLASTP svg
NC_005773:47972424797242481709919858Pseudomonas syringae pv. phaseolicola 1448A, complete genome3e-90341BLASTN svgBLASTP svg
NC_018691:28636592863659289037626718Alcanivorax dieselolei B5 chromosome, complete genome2e-81311BLASTN svgBLASTP svg
NC_015733:25813242581324263433453011Pseudomonas putida S16 chromosome, complete genome9e-75289BLASTN svgBLASTP svg
NC_012660:4734363*4734363475525820896Pseudomonas fluorescens SBW25 chromosome, complete genome2e-51212BLASTN svgBLASTP svg
NC_012660:33203303320330335044730118Pseudomonas fluorescens SBW25 chromosome, complete genome2e-32149BLASTN svgBLASTP svg
NC_015740:3631326*3631326366173930414Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete2e-32149BLASTN svgBLASTP svg
NC_011770:49241274924127497209947973Pseudomonas aeruginosa LESB58, complete genome2e-23119BLASTN svgBLASTP svg
NC_008463:47432964743296476909925804Pseudomonas aeruginosa UCBPP-PA14, complete genome2e-23119BLASTN svgBLASTP svg
NC_002516:89100089100091357122572Pseudomonas aeruginosa PAO1, complete genome2e-23119BLASTN svgBLASTP svg
NC_004578:5336773*5336773541660879836Pseudomonas syringae pv. tomato str. DC3000, complete genome5e-21111BLASTN svgBLASTP svg
NC_012791:651480*65148067159920120Variovorax paradoxus S110 chromosome 1, complete genome2e-20109BLASTN svgBLASTP svg
NC_004578:895019*89501992169226674Pseudomonas syringae pv. tomato str. DC3000, complete genome7e-20107BLASTN svgBLASTP svg
NC_015410:1324313*1324313135087526563Pseudomonas mendocina NK-01 chromosome, complete genome4e-18101BLASTN svgBLASTP svg
NC_007298:17598811759881180860548725Dechloromonas aromatica RCB, complete genome4e-18101BLASTN svgBLASTP svg
NC_004547:13850013850015906820569Erwinia carotovora subsp. atroseptica SCRI1043, complete genome4e-1591.7BLASTN svgBLASTP svg
NC_009512:31189073118907313838119475Pseudomonas putida F1, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_012917:46464914646491466766521175Pectobacterium carotovorum subsp. carotovorum PC1, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_004337:3590323*35903233952993362671Shigella flexneri 2a str. 301, complete genome7e-1487.7BLASTN svgBLASTP svg
NC_008782:2568027*2568027262351455488Acidovorax sp. JS42, complete genome3e-1385.7BLASTN svgBLASTP svg
NC_007912:3466966*3466966348462717662Saccharophagus degradans 2-40, complete genome3e-1385.7BLASTN svgBLASTP svg
NC_015224:35875003587500361767930180Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,4e-1281.8BLASTN svgBLASTP svg
NC_007606:37551553755155377834323189Shigella dysenteriae Sd197, complete genome4e-1281.8BLASTN svgBLASTP svg
NC_020209:49437344943734497459930866Pseudomonas poae RE*1-1-14, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_012917:83372183372187179538075Pectobacterium carotovorum subsp. carotovorum PC1, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_002947:12680891268089129343025342Pseudomonas putida KT2440, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_004547:91355391355395334239790Erwinia carotovora subsp. atroseptica SCRI1043, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_008027:2621443*2621443264643624994Pseudomonas entomophila L48, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_008027:38443553844355388629641942Pseudomonas entomophila L48, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_008027:4953432*4953432497941825987Pseudomonas entomophila L48, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_010501:4379920*4379920440315523236Pseudomonas putida W619, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_012751:10715891071589108962118033Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), complete1e-0973.8BLASTN svgBLASTP svg
NC_012751:899394*89939492562326230Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), complete1e-0973.8BLASTN svgBLASTP svg
NC_010501:4989455*4989455501446425010Pseudomonas putida W619, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_013440:62586762586765122625360Haliangium ochraceum DSM 14365, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_014306:3006028*3006028304213136104Erwinia billingiae Eb661, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_014562:1883517*1883517190910525589Pantoea vagans C9-1 chromosome, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_012721:13704613704615927722232Burkholderia glumae BGR1 chromosome 2, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_004578:47813264781326481642335098Pseudomonas syringae pv. tomato str. DC3000, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_008027:2051821*2051821207333821518Pseudomonas entomophila L48, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_009512:755658*75565878272327066Pseudomonas putida F1, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_013947:15700001570000159398623987Stackebrandtia nassauensis DSM 44728 chromosome, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_003143:12331281233128125981426687Yersinia pestis CO92, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_004088:3382148*3382148340611023963Yersinia pestis KIM, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_005810:11302511130251115417023920Yersinia pestis biovar Microtus str. 91001, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_008149:3251196*3251196327595124756Yersinia pestis Nepal516, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_008150:65089965089967359922701Yersinia pestis Antiqua, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010159:14179931417993144109923107Yersinia pestis Angola, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010634:13423931342393136733024938Yersinia pseudotuberculosis PB1/+, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013850:21823372182337224909966763Klebsiella variicola At-22 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_015733:1793399*1793399181802124623Pseudomonas putida S16 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_020064:3609844*3609844365321743374Serratia marcescens FGI94, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_008027:3953951*3953951397851024560Pseudomonas entomophila L48, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_008027:4280000*4280000430482424825Pseudomonas entomophila L48, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_014153:30843563084356310630321948Thiomonas intermedia K12 chromosome, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_015733:41300004130000414900419005Pseudomonas putida S16 chromosome, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_015733:59098215909821595513745317Pseudomonas putida S16 chromosome, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_008781:2925818*2925818294540419587Polaromonas naphthalenivorans CJ2, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_009138:1843998*1843998189681452817Herminiimonas arsenicoxydans, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_009649:16907169074359926693Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN3,4e-0661.9BLASTN svgBLASTP svg
NC_010501:25118872511887254627834392Pseudomonas putida W619, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_010501:36715173671517370459933083Pseudomonas putida W619, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_011901:2202690*2202690223230229613Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, complete4e-0661.9BLASTN svgBLASTP svg
NC_012560:2451500*2451500248009928600Azotobacter vinelandii DJ, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_012590:850130*85013087382523696Corynebacterium aurimucosum ATCC 700975, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_013446:16485561648556170768159126Comamonas testosteroni CNB-2, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_014933:510164*51016459333883175Bacteroides helcogenes P 36-108 chromosome, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_021150:2451500*2451500248001928520Azotobacter vinelandii CA6, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_007651:72952*7295214574172790Burkholderia thailandensis E264 chromosome I, complete sequence4e-0661.9BLASTN svgBLASTP svg