Pre_GI Gene

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Host: NC_002505 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_002505:514732 Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is an epidemic serogroup of Vibrio cholerae isolated in 1971 in Bangladesh and is distinguished from the classical biotype due to hemolysin production. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
5147325161441413pyruvate kinaseQuickGO ontologyBLASTP
516560517342783transcriptional regulator DeoR familyQuickGO ontologyBLASTP
5174055192371833D-fructose-6-phosphate amidotransferaseQuickGO ontologyBLASTP
5192985203771080extracellular solute-binding protein putativeQuickGO ontologyBLASTP
5206345223941761hemolysin putativeQuickGO ontologyBLASTP
5231565251171962hypothetical proteinBLASTP
525118525654537hypothetical proteinBLASTP
5256235267891167hypothetical proteinBLASTP
527045527920876hypothetical proteinBLASTP
528305528949645hypothetical proteinBLASTP
529011529685675hypothetical proteinBLASTP
529739530338600hypothetical proteinBLASTP
530402530602201transcriptional regulatorQuickGO ontologyBLASTP
530684531124441ribonuclease HQuickGO ontologyBLASTP
534198534722525type IV pilin putativeQuickGO ontologyBLASTP
5354185366981281hypothetical proteinBLASTP
536876537103228hypothetical proteinBLASTP
537151537519369hypothetical proteinBLASTP
537550538284735hypothetical proteinBLASTP
538423538599177hypothetical proteinBLASTP
538603539046444hypothetical proteinBLASTP
539097539540444hypothetical proteinBLASTP
539531540004474DNA repair protein RadC-related proteinQuickGO ontologyBLASTP
540216540335120hypothetical protein
5413195429081590methyl-accepting chemotaxis proteinQuickGO ontologyBLASTP
544362545177816transcriptional regulator AraCXylS familyQuickGO ontologyBLASTP
5451745470541881methyl-accepting chemotaxis proteinQuickGO ontologyBLASTP
5471585483901233hypothetical proteinBLASTP
5487805500211242phage integraseQuickGO ontologyBLASTP
55018755026276tRNA-MetQuickGO ontologyBLASTP
5504075522841878RNA polymerase sigma factorQuickGO ontologyBLASTP