Pre_GI: BLASTP Hits

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Query: NC_008258:2190635:2205512 Shigella flexneri 5 str. 8401, complete genome

Start: 2205512, End: 2205637, Length: 126

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Shigella spp. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004741:2169877:2184286218428621901225837Shigella flexneri 2a str. 2457T, complete genome7e-1682.4
NC_008258:2190635:2205080220508022083353256Shigella flexneri 5 str. 8401, complete genome1e-1581.6
NC_004851:191709:207182207182207484303Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceIS600 ORF12e-1580.9
NC_004337:309833:312636312636312938303Shigella flexneri 2a str. 301, complete genomeIS600 ORF12e-1580.9
NC_007385:157516:173682173682173984303Shigella sonnei Ss046 plasmid pSS_046, complete sequenceIS600 ORF12e-1580.9
NC_007606:1209132:122620412262041226506303Shigella dysenteriae Sd197, complete genomeIS600 ORF12e-1580.9
NC_004741:4364235:438247743824774382779303Shigella flexneri 2a str. 2457T, complete genomeIS600 orfA2e-1580.9
NC_007384:2007467:201384820138482014150303Shigella sonnei Ss046, complete genomeIS600 ORF12e-1580.9
NC_007384:1320287:132157813215781321880303Shigella sonnei Ss046, complete genomeIS600 ORF12e-1580.9
NC_004741:310382:325572325572325874303Shigella flexneri 2a str. 2457T, complete genomeIS600 orfA2e-1580.9
NC_008258:1873805:188486918848691885171303Shigella flexneri 5 str. 8401, complete genomeIS600 ORF12e-1580.9
NC_007606:1515403:153355015335501533852303Shigella dysenteriae Sd197, complete genomeIS600 ORF12e-1580.9
NC_011750:1094000:109946510994651099767303Escherichia coli IAI39 chromosome, complete genometransposase ORF A, IS6002e-1580.9
NC_011750:1565000:156675015667501567052303Escherichia coli IAI39 chromosome, complete genometransposase ORF A, IS6002e-1580.9
NC_004431:3409389:342678534267853427087303Escherichia coli CFT073, complete genomeUnknown in IS2e-1580.9
NC_007613:1038000:103815610381561038458303Shigella boydii Sb227, complete genomeIS600 ORF12e-1580.9
NC_013361:1754346:176055717605571760859303Escherichia coli O26:H11 str. 11368 chromosome, complete genomeIS600 transposase OrfA2e-1580.9
NC_016822:1304398:131698713169871317289303Shigella sonnei 53G, complete genomeIS600 orf12e-1580.9
NC_016822:267758:285694285694285996303Shigella sonnei 53G, complete genomeIS600 orf12e-1580.9
NC_016822:3946500:395283039528303953132303Shigella sonnei 53G, complete genomeIS600 ORF12e-1580.9
NC_016822:1304398:132601013260101326312303Shigella sonnei 53G, complete genomeIS600 ORF12e-1580.9
NC_007385:157516:165069165069165371303Shigella sonnei Ss046 plasmid pSS_046, complete sequenceIS600 ORF12e-1580.9
NC_007384:1320287:133414613341461334448303Shigella sonnei Ss046, complete genomeIS600 ORF12e-1580.9
NC_007384:307013:321696321696321998303Shigella sonnei Ss046, complete genomeIS600 ORF12e-1580.9
NC_007384:2007467:202540920254092025711303Shigella sonnei Ss046, complete genomeIS600 ORF12e-1580.9
NC_007384:1320287:134239213423921342694303Shigella sonnei Ss046, complete genomeIS600 ORF12e-1580.9
NC_007384:307013:317534317534317836303Shigella sonnei Ss046, complete genomeIS600 ORF12e-1580.9
NC_007384:3741708:376267337626733762975303Shigella sonnei Ss046, complete genomeIS600 ORF12e-1580.9
NC_007384:3741708:375612437561243756426303Shigella sonnei Ss046, complete genomeIS600 ORF12e-1580.9
NC_016822:3420826:343631334363133436615303Shigella sonnei 53G, complete genomeIS600 orf12e-1580.9
NC_016822:3420826:342645334264533426755303Shigella sonnei 53G, complete genomeIS600 orf12e-1580.9
NC_016822:2940000:294105129410512941353303Shigella sonnei 53G, complete genomeIS600 orf12e-1580.9
NC_016822:2678691:269889826988982699200303Shigella sonnei 53G, complete genomeIS600 orf12e-1580.9
NC_017319:155958:168379168379168681303Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceIS600 ORF13e-1580.5
NC_017319:192482:216256216256216558303Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceIS600 ORF14e-1580.1
NC_007607:87000:119107119107119409303Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceIS600 ORF14e-1580.1
NC_007607:87000:112235112235112537303Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceIS600 ORF14e-1580.1
NC_004337:309833:331258331258331620363Shigella flexneri 2a str. 301, complete genomeIS600 ORF15e-1579.7
NC_004337:1065609:108078010807801081082303Shigella flexneri 2a str. 301, complete genomeIS600 ORF17e-1579.3
NC_008258:1873805:188102618810261881328303Shigella flexneri 5 str. 8401, complete genomeIS600 ORF17e-1579.3
NC_004337:309833:326428326428326730303Shigella flexneri 2a str. 301, complete genomeIS600 ORF17e-1579.3
NC_008258:1076922:109882210988221099124303Shigella flexneri 5 str. 8401, complete genomeIS600 ORF17e-1579.3
NC_004741:2169877:218454121845412184843303Shigella flexneri 2a str. 2457T, complete genome7e-1579.3
NC_004741:310382:315192315192315494303Shigella flexneri 2a str. 2457T, complete genomeIS600 orfA7e-1579.3
NC_008258:1934479:193915719391571939459303Shigella flexneri 5 str. 8401, complete genomeIS600 ORF17e-1579.3
NC_004337:3590323:391147039114703911772303Shigella flexneri 2a str. 301, complete genomeIS600 ORF17e-1579.3
NC_004337:2185282:220379322037932204095303Shigella flexneri 2a str. 301, complete genomeIS600 ORF17e-1579.3
NC_004741:2593012:259418725941872594489303Shigella flexneri 2a str. 2457T, complete genomeIS600 orfA7e-1579.3
NC_004337:309833:316047316047316349303Shigella flexneri 2a str. 301, complete genomeIS600 ORF17e-1579.3
NC_004337:3590323:385737038573703857672303Shigella flexneri 2a str. 301, complete genomeIS600 ORF17e-1579.3
NC_008258:2045000:205839320583932058695303Shigella flexneri 5 str. 8401, complete genomeIS600 ORF17e-1579.3
NC_017319:192482:197510197510197812303Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceIS600 ORF11e-1479
NC_017319:192482:207065207065207367303Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceIS600 ORF11e-1479
NC_004851:191709:197582197582197884303Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceIS600 ORF19e-1579
NC_007608:97092:120973120973121275303Shigella boydii Sb227 plasmid pSB4_227, complete sequenceIS600 ORF11e-1478.6
NC_017328:3625000:364538636453863645685300Shigella flexneri 2002017 chromosome, complete genomeISSd1, transposase orfA/B, fusion3e-1477
NC_004741:4160500:416301941630194163318300Shigella flexneri 2a str. 2457T, complete genomeIS600 orfA3e-1477
NC_008258:3550500:357109635710963571395300Shigella flexneri 5 str. 8401, complete genomeIS600 ORF13e-1477
NC_007607:87000:932249322493526303Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceIS600 ORF13e-1477
NC_010660:86445:898198981990121303Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequenceISSd1, transposase orfA/B, fusion4e-1476.6
NC_012967:4473368:449367244936724493974303Escherichia coli B str. REL606 chromosome, complete genomeIS600 ORF1-like protein1e-1375.1
NC_012947:3917619:392013439201343920436303Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completetransposase IS3/IS911 family protein1e-1375.1
NC_011750:4947500:496278849627884963087300Escherichia coli IAI39 chromosome, complete genome2e-1374.7
NC_010658:1933605:194825719482571948565309Shigella boydii CDC 3083-94, complete genometransposase family7e-1165.9
NC_004851:191709:216373216373216756384Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceIS600 ORF12e-1064.7
NC_000913:4494773:450659745065974506965369Escherichia coli K12, complete genometransposase3e-0857
NC_010473:4596500:460840546084054608773369Escherichia coli str. K-12 substr. DH10B, complete genome3e-0857
AC_000091:4501430:451325445132544513622369Escherichia coli W3110 DNA, complete genome3e-0857
CP002797:4603787:464303946430394643407369Escherichia coli NA114, complete genomeTransposase ORF A IS6004e-0857
NC_013008:1307392:133951013395101339851342Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein2e-0754.7
NC_008576:4130000:414252041425204142741222Magnetococcus sp. MC-1, complete genomeIS600 ORF12e-0754.3