Pre_GI: BLASTN Hits

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Query: NC_013716:3708415 Citrobacter rodentium ICC168, complete genome

Start: 3708415, End: 3730778, Length: 22364

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_013716:4306695*4306695439827491580Citrobacter rodentium ICC168, complete genome05311BLASTN svgBLASTP svg
NC_013716:33278813327881336492937049Citrobacter rodentium ICC168, complete genome05311BLASTN svgBLASTP svg
NC_013716:1138441*1138441116841529975Citrobacter rodentium ICC168, complete genome05311BLASTN svgBLASTP svg
NC_013716:4824541*4824541484830623766Citrobacter rodentium ICC168, complete genome05309BLASTN svgBLASTP svg
NC_013716:27645502764550279838233833Citrobacter rodentium ICC168, complete genome05309BLASTN svgBLASTP svg
NC_013716:24763342476334249822421891Citrobacter rodentium ICC168, complete genome05309BLASTN svgBLASTP svg
NC_009801:3374501*3374501339880324303Escherichia coli E24377A, complete genome04871BLASTN svgBLASTP svg
NC_009790:42112421126914727036Escherichia coli E24377A plasmid pETEC_74, complete sequence04871BLASTN svgBLASTP svg
NC_009801:17566101756610177871522106Escherichia coli E24377A, complete genome04351BLASTN svgBLASTP svg
NC_013716:5201097*5201097527659975503Citrobacter rodentium ICC168, complete genome03592BLASTN svgBLASTP svg
NC_013716:31097003109700314990540206Citrobacter rodentium ICC168, complete genome02058BLASTN svgBLASTP svg
NC_013716:3512950*3512950355955346604Citrobacter rodentium ICC168, complete genome02054BLASTN svgBLASTP svg
NC_013716:2139952*2139952219678356832Citrobacter rodentium ICC168, complete genome02054BLASTN svgBLASTP svg
NC_008253:334467*33446741611981653Escherichia coli 536, complete genome01590BLASTN svgBLASTP svg
NC_011748:4792703*4792703481092818226Escherichia coli 55989, complete genome01574BLASTN svgBLASTP svg
CU928145:4792703*4792703481092818226Escherichia coli 55989 chromosome, complete genome01574BLASTN svgBLASTP svg
NC_009648:14876921487692151904531354Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome01538BLASTN svgBLASTP svg
NC_011740:4007000*4007000403180124802Escherichia fergusonii ATCC 35469, complete genome01530BLASTN svgBLASTP svg
NC_009649:948719487111709922229Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN3,01491BLASTN svgBLASTP svg
NC_010498:22783062278306230147623171Escherichia coli SMS-3-5, complete genome01467BLASTN svgBLASTP svg
NC_014121:1589389*1589389162248733099Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete01461BLASTN svgBLASTP svg
NC_014121:10385541038554106077322220Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete01459BLASTN svgBLASTP svg
NC_014121:1101093*1101093113435733265Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete01459BLASTN svgBLASTP svg
NC_014121:18228951822895184662423730Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete01459BLASTN svgBLASTP svg
NC_014121:23304512330451236009929649Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete01459BLASTN svgBLASTP svg
NC_014121:31889283188928321328724360Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete01459BLASTN svgBLASTP svg
NC_014121:48950048950052159932100Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete01459BLASTN svgBLASTP svg
NC_014121:50000695000069503057530507Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete01459BLASTN svgBLASTP svg
NC_014121:45773244577324460113023807Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete01451BLASTN svgBLASTP svg
NC_004337:3049118*3049118311609966982Shigella flexneri 2a str. 301, complete genome01132BLASTN svgBLASTP svg
NC_004741:3041294*3041294310468963396Shigella flexneri 2a str. 2457T, complete genome01132BLASTN svgBLASTP svg
NC_004631:44940004494000451380819809Salmonella enterica subsp. enterica serovar Typhi Ty2, complete01066BLASTN svgBLASTP svg
NC_003198:4513900*4513900454590232003Salmonella enterica subsp. enterica serovar Typhi str. CT18,01066BLASTN svgBLASTP svg
NC_002695:38522333852233387887626644Escherichia coli O157:H7 str. Sakai, complete genome01063BLASTN svgBLASTP svg
NC_002655:39195453919545394618926645Escherichia coli O157:H7 EDL933, complete genome01063BLASTN svgBLASTP svg
NC_013508:2130681*2130681216209931419Edwardsiella tarda EIB202, complete genome0872BLASTN svgBLASTP svg
NC_003197:45518804551880457449822619Salmonella typhimurium LT2, complete genome0773BLASTN svgBLASTP svg
NC_011080:45430004543000457179028791Salmonella enterica subsp. enterica serovar Newport str. SL254,0771BLASTN svgBLASTP svg
NC_014121:677799*67779969989822100Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete0765BLASTN svgBLASTP svg
NC_004631:43817244381724440326721544Salmonella enterica subsp. enterica serovar Typhi Ty2, complete0741BLASTN svgBLASTP svg
NC_003198:4397074*4397074441861721544Salmonella enterica subsp. enterica serovar Typhi str. CT18,0741BLASTN svgBLASTP svg
NC_011740:29865142986514300959323080Escherichia fergusonii ATCC 35469, complete genome0690BLASTN svgBLASTP svg
NC_009648:3720000*3720000374226022261Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome0674BLASTN svgBLASTP svg
NC_007385:15751615751617664619131Shigella sonnei Ss046 plasmid pSS_046, complete sequence7e-155555BLASTN svgBLASTP svg
NC_012779:1449500*1449500150683157332Edwardsiella ictaluri 93-146, complete genome4e-153549BLASTN svgBLASTP svg
NC_007607:870008700012362836629Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequence1e-147531BLASTN svgBLASTP svg
NC_014121:398012*39801242358425573Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete2e-145523BLASTN svgBLASTP svg
NC_014500:40493844049384407390824525Dickeya dadantii 3937 chromosome, complete genome2e-112414BLASTN svgBLASTP svg
NC_010660:33109331095109917991Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence1e-97365BLASTN svgBLASTP svg
NC_009788:16360163603711520756Escherichia coli E24377A plasmid pETEC_73, complete sequence5e-88333BLASTN svgBLASTP svg
NC_008253:47354184735418477925943842Escherichia coli 536, complete genome3e-83317BLASTN svgBLASTP svg
NC_012880:3982383*3982383401264230260Dickeya dadantii Ech703, complete genome2e-65258BLASTN svgBLASTP svg
NC_014839:68308683089375025443Pantoea sp. At-9b plasmid pPAT9B02, complete sequence1e-63252BLASTN svgBLASTP svg
NC_020063:20772332077233210134824116Enterobacteriaceae bacterium strain FGI 57, complete genome8e-62246BLASTN svgBLASTP svg
NC_011149:11106421110642113231521674Salmonella enterica subsp. enterica serovar Agona str. SL483,8e-62246BLASTN svgBLASTP svg
NC_015663:18690001869000191219543196Enterobacter aerogenes KCTC 2190 chromosome, complete genome3e-61244BLASTN svgBLASTP svg
NC_020063:33525163352516337629223777Enterobacteriaceae bacterium strain FGI 57, complete genome8e-59236BLASTN svgBLASTP svg
NC_012912:4012112*4012112403907126960Dickeya zeae Ech1591, complete genome1e-54222BLASTN svgBLASTP svg
NC_014500:56486456486459190627043Dickeya dadantii 3937 chromosome, complete genome1e-54222BLASTN svgBLASTP svg
NC_020063:31040003104000312597921980Enterobacteriaceae bacterium strain FGI 57, complete genome3e-52214BLASTN svgBLASTP svg
NC_010468:2406387*2406387242509318707Escherichia coli ATCC 8739, complete genome1e-51212BLASTN svgBLASTP svg
NC_007384:17633751763375178359920225Shigella sonnei Ss046, complete genome1e-51212BLASTN svgBLASTP svg
NC_011751:17141311714131174129427164Escherichia coli UMN026 chromosome, complete genome5e-51210BLASTN svgBLASTP svg
CU928160:25693225693227863921708Escherichia coli IAI1 chromosome, complete genome3e-49204BLASTN svgBLASTP svg
NC_021066:3703725*3703725372609922375Raoultella ornithinolytica B6, complete genome4e-48200BLASTN svgBLASTP svg
NC_008563:258725*25872528280524081Escherichia coli APEC O1, complete genome7e-47196BLASTN svgBLASTP svg
NC_007946:25874725874728282624080Escherichia coli UTI89, complete genome7e-47196BLASTN svgBLASTP svg
NC_007384:27881027881029760818799Shigella sonnei Ss046, complete genome2e-44188BLASTN svgBLASTP svg
NC_002695:26123526123528377222538Escherichia coli O157:H7 str. Sakai, complete genome1e-42182BLASTN svgBLASTP svg
NC_002655:26123626123628140820173Escherichia coli O157:H7 EDL933, complete genome1e-42182BLASTN svgBLASTP svg
NC_008563:15778791577879160172323845Escherichia coli APEC O1, complete genome4e-42180BLASTN svgBLASTP svg
NC_008253:25705925705928215125093Escherichia coli 536, complete genome4e-42180BLASTN svgBLASTP svg
NC_007946:15866561586656161278726132Escherichia coli UTI89, complete genome4e-42180BLASTN svgBLASTP svg
NC_004431:17131411713141173884125701Escherichia coli CFT073, complete genome4e-42180BLASTN svgBLASTP svg
NC_021066:4906239*4906239493059624358Raoultella ornithinolytica B6, complete genome2e-41178BLASTN svgBLASTP svg
NC_015061:12519051251905128092529021Rahnella sp. Y9602 chromosome, complete genome3e-40174BLASTN svgBLASTP svg
NC_012779:28560512856051288659930549Edwardsiella ictaluri 93-146, complete genome2e-37165BLASTN svgBLASTP svg
NC_020181:3585898*3585898362589840001Enterobacter aerogenes EA1509E, complete genome4e-33151BLASTN svgBLASTP svg
NC_011751:25683025683028052023691Escherichia coli UMN026 chromosome, complete genome1e-32149BLASTN svgBLASTP svg
NC_013592:956829*95682998781830990Dickeya dadantii Ech586, complete genome5e-23117BLASTN svgBLASTP svg
NC_007778:28759732875973289899723025Rhodopseudomonas palustris HaA2, complete genome5e-23117BLASTN svgBLASTP svg
NC_014228:22700002270000231663046631Xenorhabdus nematophila ATCC 19061, complete genome1e-20109BLASTN svgBLASTP svg
NC_006905:4486433*4486433450919922767Salmonella enterica subsp. enterica serovar Choleraesuis str2e-19105BLASTN svgBLASTP svg
NC_010102:44778364477836450325125416Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,2e-19105BLASTN svgBLASTP svg
NC_011083:45478254547825460814560321Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,2e-19105BLASTN svgBLASTP svg
NC_012917:569856*56985658778417929Pectobacterium carotovorum subsp. carotovorum PC1, complete genome3e-18101BLASTN svgBLASTP svg
NC_005773:69499069499072559930610Pseudomonas syringae pv. phaseolicola 1448A, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_008253:3941938*3941938399883856901Escherichia coli 536, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_004851:15767515767518009922425Shigella flexneri 2a str. 301 plasmid pCP301, complete sequence7e-1693.7BLASTN svgBLASTP svg
NC_013592:14650151465015148872023706Dickeya dadantii Ech586, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_020211:379000*37900040159422595Serratia marcescens WW4, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_012917:32411963241196329451553320Pectobacterium carotovorum subsp. carotovorum PC1, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_004547:1062410*1062410108132518916Erwinia carotovora subsp. atroseptica SCRI1043, complete genome1e-1489.7BLASTN svgBLASTP svg
AP010958:36273553627355365976432410Escherichia coli O103:H2 str. 12009 DNA, complete genome2e-1385.7BLASTN svgBLASTP svg
AP010958:5090696*5090696512565934964Escherichia coli O103:H2 str. 12009 DNA, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_004337:3590323*35903233952993362671Shigella flexneri 2a str. 301, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_004337:36768736768739153023844Shigella flexneri 2a str. 301, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_004741:36682236682238968922868Shigella flexneri 2a str. 2457T, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_007606:4182188*4182188420162219435Shigella dysenteriae Sd197, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_007613:44030704403070442929526226Shigella boydii Sb227, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_008258:401786*40178642629524510Shigella flexneri 5 str. 8401, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_015963:450045002599221493Enterobacter asburiae LF7a plasmid pENTAS01, complete sequence2e-1385.7BLASTN svgBLASTP svg
NC_020063:41704644170464419392123458Enterobacteriaceae bacterium strain FGI 57, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_013421:20040882004088202439520308Pectobacterium wasabiae WPP163, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_009720:3281000*3281000330704926050Xanthobacter autotrophicus Py2, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_013282:3719500*3719500373815318654Cronobacter turicensis, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_010660:175200*17520020478429585Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence4e-1177.8BLASTN svgBLASTP svg
NC_004431:3409389*3409389349493685548Escherichia coli CFT073, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_002695:45841774584177463575951583Escherichia coli O157:H7 str. Sakai, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_002695:3468873*3468873351343744565Escherichia coli O157:H7 str. Sakai, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_002695:17946351794635181624421610Escherichia coli O157:H7 str. Sakai, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_002695:13648331364833138927424442Escherichia coli O157:H7 str. Sakai, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_002655:46531604653160470328250123Escherichia coli O157:H7 EDL933, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_002655:22647732264773228824723475Escherichia coli O157:H7 EDL933, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_002655:14486051448605147337924775Escherichia coli O157:H7 EDL933, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_002655:10530821053082107777224691Escherichia coli O157:H7 EDL933, complete genome2e-1075.8BLASTN svgBLASTP svg
AP010958:3853082*3853082389809945018Escherichia coli O103:H2 str. 12009 DNA, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_007712:12625931262593129009927507Sodalis glossinidius str. 'morsitans', complete genome2e-1075.8BLASTN svgBLASTP svg
NC_007712:1712667*1712667173153718871Sodalis glossinidius str. 'morsitans', complete genome2e-1075.8BLASTN svgBLASTP svg
NC_009801:2898426*2898426294876250337Escherichia coli E24377A, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_009801:13926961392696142187429179Escherichia coli E24377A, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_009512:31189073118907313838119475Pseudomonas putida F1, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_007712:4067500*4067500409105923560Sodalis glossinidius str. 'morsitans', complete genome2e-1075.8BLASTN svgBLASTP svg
NC_007712:3629358*3629358365546826111Sodalis glossinidius str. 'morsitans', complete genome2e-1075.8BLASTN svgBLASTP svg
NC_007712:29780002978000300020322204Sodalis glossinidius str. 'morsitans', complete genome2e-1075.8BLASTN svgBLASTP svg
NC_007712:26499402649940266759917660Sodalis glossinidius str. 'morsitans', complete genome2e-1075.8BLASTN svgBLASTP svg
NC_007712:254000*25400027659922600Sodalis glossinidius str. 'morsitans', complete genome2e-1075.8BLASTN svgBLASTP svg
NC_007712:1954808*1954808197959924792Sodalis glossinidius str. 'morsitans', complete genome2e-1075.8BLASTN svgBLASTP svg
NC_007712:1893066*1893066191459921534Sodalis glossinidius str. 'morsitans', complete genome2e-1075.8BLASTN svgBLASTP svg
NC_018868:2458122*2458122248388625765Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_007941:11319113195659945281Escherichia coli UTI89 plasmid pUTI89, complete sequence3e-0971.9BLASTN svgBLASTP svg
NC_010660:864458644510942022976Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence3e-0971.9BLASTN svgBLASTP svg
NC_020064:37904723790472381935828887Serratia marcescens FGI94, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_007712:31630003163000318759924600Sodalis glossinidius str. 'morsitans', complete genome4e-0867.9BLASTN svgBLASTP svg
NC_010658:1933605*1933605196015326549Shigella boydii CDC 3083-94, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_010658:36226103622610364133018721Shigella boydii CDC 3083-94, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_014500:3097362*3097362318793090569Dickeya dadantii 3937 chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_014500:89413689413693546441329Dickeya dadantii 3937 chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_015061:3840463*3840463391463974177Rahnella sp. Y9602 chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_011751:34536833453683351238358701Escherichia coli UMN026 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010498:11179381117938114953131594Escherichia coli SMS-3-5, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_009778:259241*25924128824029000Enterobacter sakazakii ATCC BAA-894, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_004547:2470978*2470978249481623839Erwinia carotovora subsp. atroseptica SCRI1043, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_009792:4017510*4017510404823430725Citrobacter koseri ATCC BAA-895, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_010694:30554033055403307880623404Erwinia tasmaniensis, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_010694:3178842*3178842319909920258Erwinia tasmaniensis, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_013592:577831*57783159805520225Dickeya dadantii Ech586, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_003198:33131433131435709925786Salmonella enterica subsp. enterica serovar Typhi str. CT18,3e-0661.9BLASTN svgBLASTP svg
NC_004631:26159082615908263824422337Salmonella enterica subsp. enterica serovar Typhi Ty2, complete3e-0661.9BLASTN svgBLASTP svg
NC_007712:532500*53250055659924100Sodalis glossinidius str. 'morsitans', complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007946:47797454779745482809648352Escherichia coli UTI89, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_010102:27623042762304278909926796Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,3e-0661.9BLASTN svgBLASTP svg
NC_014761:1405408*1405408143243427027Oceanithermus profundus DSM 14977 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_020211:4484817*4484817450328218466Serratia marcescens WW4, complete genome3e-0661.9BLASTN svgBLASTP svg
CP002797:47757804775780479609920320Escherichia coli NA114, complete genome3e-0661.9BLASTN svgBLASTP svg