Pre_GI Gene

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Host: NC_004547 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004547:2470978 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
2470978247240814316-phospho-beta-glucosidaseQuickGO ontologyBLASTP
24726402473437798putative inositol monophosphataseQuickGO ontologyBLASTP
24735012473887387hypothetical proteinBLASTP
24739042474320417hypothetical protein
247431724754621146hypothetical proteinBLASTP
24754682476352885hypothetical proteinBLASTP
24768542477447594hypothetical protein
247769224787561065hypothetical proteinBLASTP
24790152479443429hypothetical proteinBLASTP
24795302479928399hypothetical proteinBLASTP
24799392480340402hypothetical proteinBLASTP
24808472481182336prophage integrase partialQuickGO ontologyBLASTP
24814642481994531hypothetical protein
248199724842672271hypothetical proteinBLASTP
24844892484836348Bacteriophage polarity suppression proteinQuickGO ontologyBLASTP
248501624860651050prophage integraseQuickGO ontologyBLASTP
248623124873221092putative ATPGTP-binding proteinQuickGO ontologyBLASTP
24874522488039588peptidyl-tRNA hydrolaseQuickGO ontologyBLASTP
24883522488621270hypothetical proteinBLASTP
24887852489732948ribose-phosphate pyrophosphokinaseQuickGO ontologyBLASTP
248987024907428734-diphosphocytidyl-2-C-methyl-D-erythritol kinaseQuickGO ontologyBLASTP
24907452491368624outer membrane lipoprotein LolB precursorQuickGO ontologyBLASTP
249159924928551257glutamyl-tRNA reductaseQuickGO ontologyBLASTP
249288924939711083peptide chain release factor 1QuickGO ontologyBLASTP
24939712494816846N5-glutamine S-adenosyl-L-methionine-dependent methyltransferaseQuickGO ontologyBLASTP