Pre_GI Gene

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Host: NC_012917 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012917:569856 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
569135569866732phosphonate C-P lyase system protein PhnLQuickGO ontologyBLASTP
5698565709921137phosphonate metabolism protein PhnMQuickGO ontologyBLASTP
570995571564570phosphonate metabolism protein15-bisphosphokinase PRPP-forming PhnNQuickGO ontologyBLASTP
571603572400798phosphonate metabolism protein PhnPQuickGO ontologyBLASTP
5727095750332325outer membrane autotransporter barrel domain proteinQuickGO ontologyBLASTP
575169575996828hypothetical proteinBLASTP
576506576769264hypothetical protein
576898577800903transcriptional regulator LysR familyQuickGO ontologyBLASTP
5785235797461224abortive infection proteinQuickGO ontologyBLASTP
579758580282525hypothetical protein
580457580762306CcdB proteinQuickGO ontologyBLASTP
580765580983219Post-segregation antitoxin CcdAQuickGO ontologyBLASTP
581042581785744mobilization proteinQuickGO ontologyBLASTP
581837582520684hypothetical proteinBLASTP
582689583030342hypothetical proteinBLASTP
583171583341171hypothetical protein putative repressor interproQuickGO ontologyBLASTP
5834835847421260integrase family proteinQuickGO ontologyBLASTP
58490458497976tRNA-PheQuickGO ontologyBLASTP
585106585681576putative transcriptional regulator TetR familyQuickGO ontologyBLASTP
5857255874761752cytochrome c biogenesis protein transmembrane regionQuickGO ontologyBLASTP
587452587784333CutA1 divalent ion tolerance proteinQuickGO ontologyBLASTP