Pre_GI Gene

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Host: NC_009512 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009512:3118907 Pseudomonas putida F1, complete genome

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from a polluted creek in Urbana, Illinois, USA by enrichment culture with ethylbenzyne as a sole source of carbon and energy. Its ability to degrade several different compounds including benzene, toluene, and ethylbenzene makes this species useful in the bioremediation of sites contaminated with multiple aromatic hydrocarbons. Underground gasoline tanks which have developed leaks can contaminate soil and water with a variety of these compounds. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
311750731189101404response regulator receiver sensor signal transduction histidine kinaseQuickGO ontologyBLASTP
311890731207211815integral membrane sensor signal transduction histidine kinaseQuickGO ontologyBLASTP
31207183121716999Cytochrome-c peroxidaseQuickGO ontologyBLASTP
312191431232841371response regulator receiver proteinQuickGO ontologyBLASTP
31234053124070666protein of unknown function DUF159QuickGO ontologyBLASTP
31246873125016330hypothetical proteinBLASTP
31254853125739255hypothetical proteinBLASTP
31257323126031300Helix-turn-helix type 11 domain proteinQuickGO ontologyBLASTP
31261083126623516protein of unknown function DUF925QuickGO ontologyBLASTP
31272983128104807Diaminopimelate epimeraseQuickGO ontologyBLASTP
31283723128953582Uncharacterized protein putative lipoproteinQuickGO ontologyBLASTP
31298553130457603OsmC family proteinQuickGO ontologyBLASTP
313108631326721587ABC transporter relatedQuickGO ontologyBLASTP
313284831340411194major facilitator superfamily MFS_1QuickGO ontologyBLASTP
313400331350491047dienelactone hydrolase-like proteinQuickGO ontologyBLASTP
31352513136093843Glutathione S-transferase C-terminal domainQuickGO ontologyBLASTP
313667831383811704AmidaseQuickGO ontologyBLASTP