Pre_GI Gene

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Host: NC_004547 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004547:1062410 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
10624101063174765hypothetical proteinBLASTP
10634901064089600TetR-family transcriptional regulatorQuickGO ontologyBLASTP
10642071064794588probable NADPH oxidoreductaseQuickGO ontologyBLASTP
10648201064996177hypothetical protein
10650601065287228hypothetical protein
10658511066357507acetyltransferaseQuickGO ontologyBLASTP
10665551067454900LysR-family transcriptional regulatorQuickGO ontologyBLASTP
10675531068080528putative acetyltransferaseQuickGO ontologyBLASTP
106807710692641188hypothetical proteinBLASTP
10697811070074294hypothetical proteinBLASTP
10701421070561420putative acetyltransferaseQuickGO ontologyBLASTP
107091510735212607putative restriction enzymeQuickGO ontologyBLASTP
10739661074184219toxin addiction systemantidoteQuickGO ontologyBLASTP
10741991074447249putative regulatory proteinQuickGO ontologyBLASTP
10745321074786255putative regulatory proteinQuickGO ontologyBLASTP
10748901075132243transcriptional regulatorQuickGO ontologyBLASTP
1075223107529876tRNA-PheQuickGO ontologyBLASTP
107616810783212154ornithine decarboxylase constitutiveQuickGO ontologyBLASTP
10783811079040660putative short chain dehydrogenaseQuickGO ontologyBLASTP
10791991079828630putative TetR-family transcriptional regulatorQuickGO ontology
108011710813251209hypothetical proteinBLASTP