Pre_GI: BLASTP Hits

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Query: NC_004129:4333302:4343541 Pseudomonas fluorescens Pf-5, complete genome

Start: 4343541, End: 4346630, Length: 3090

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015566:3622385:3631992363199236353693378Serratia sp. AS12 chromosome, complete genomehypothetical protein0878
NC_007434:1809946:1813421181342118166993279Burkholderia pseudomallei 1710b chromosome I, complete sequencegp200872
NC_020260:1293860:1294506129450612976673162Cronobacter sakazakii Sp291, complete genomehypothetical protein0816
NC_013282:1842412:1843675184367518469203246Cronobacter turicensis, complete genomehypothetical protein0810
NC_007434:1712000:1719332171933217227333402Burkholderia pseudomallei 1710b chromosome I, complete sequencegp210808
NC_015379:4630367:4660073466007346636303558Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Putative phage host specificity protein0795
NC_017986:4931104:4931104493110449396448541Pseudomonas putida ND6 chromosome, complete genomehypothetical protein0791
NC_015062:58826:7352373523767083186Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequencehypothetical protein0775
NC_013892:3803278:3803278380327838064633186Xenorhabdus bovienii SS-2004 chromosome, complete genomephage host specificity protein0771
NC_020063:2531643:2548544254854425519873444Enterobacteriaceae bacterium strain FGI 57, complete genomephage-related protein, tail component0768
NC_009436:2395913:2410224241022424134093186Enterobacter sp. 638, complete genomefibronectin type III domain-containing protein0764
NC_020418:2084937:2105291210529121093794089Morganella morganii subsp. morganii KT, complete genomePhage tail fiber protein0739
NC_014838:254322:2568402568402600283189Pantoea sp. At-9b plasmid pPAT9B01, complete sequencehypothetical protein0735
NC_020418:2868000:2888136288813628913123177Morganella morganii subsp. morganii KT, complete genomePhage tail fiber protein0732
NC_016612:4119410:41335034133503414383710335Klebsiella oxytoca KCTC 1686 chromosome, complete genomegp240729
NC_016612:3843358:38433583843358385606212705Klebsiella oxytoca KCTC 1686 chromosome, complete genomegp240722
NC_017047:1934430:1935102193510219382993198Rahnella aquatilis HX2 chromosome, complete genomehypothetical protein0701
NC_016816:2925459:2941016294101629442463231Pantoea ananatis LMG 5342, complete genomephage tail protein0689
NC_002695:917509:9187149187149221273414Escherichia coli O157:H7 str. Sakai, complete genomeputative host specificity protein1e-142508
NC_011353:921500:9220799220799254923414Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein1e-142508
NC_013008:918215:9236729236729270853414Escherichia coli O157:H7 str. TW14359 chromosome, complete genometail component of prophage CP-933K1e-142508
NC_013941:1014386:1015744101574410191573414Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeHost specificity protein J7e-142505
NC_013353:867869:8685718685718719663396Escherichia coli O103:H2 str. 12009, complete genomehost specificity protein3e-141503
AP010958:867869:8685718685718719663396Escherichia coli O103:H2 str. 12009 DNA, complete genomeputative host specificity protein3e-141503
NC_013941:338121:3388533388533422663414Escherichia coli O55:H7 str. CB9615 chromosome, complete genomephage-related protein, tail component3e-141503
NC_013361:649518:6502116502116536243414Escherichia coli O26:H11 str. 11368 chromosome, complete genomehost specificity protein1e-139498
AP010958:604719:6047196047196081173399Escherichia coli O103:H2 str. 12009 DNA, complete genomeputative host specificity protein8e-140498
NC_013353:604719:6047196047196081173399Escherichia coli O103:H2 str. 12009, complete genomehost specificity protein8e-140498
NC_013941:733286:7332867332867366993414Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeHost specificity protein J3e-139496
NC_013941:1963523:1969589196958919726243036Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeHost specificity protein3e-139496
NC_011353:1195179:1208230120823012117033474Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein3e-138493
NC_013353:2134556:2147838214783821513173480Escherichia coli O103:H2 str. 12009, complete genomehost specificity protein4e-137489
AP010958:2134556:2147838214783821513173480Escherichia coli O103:H2 str. 12009 DNA, complete genomeputative host specificity protein4e-137489
NC_002655:919654:9203629203629237783417Escherichia coli O157:H7 EDL933, complete genomeputative tail component of prophage CP-933K5e-137489
NC_011751:680417:6811486811486846453498Escherichia coli UMN026 chromosome, complete genomeHost specificity protein J of prophage1e-136488
NC_011601:756885:7618197618197652323414Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehost specificity protein2e-136487
NC_002695:2158314:2163056216305621665353480Escherichia coli O157:H7 str. Sakai, complete genomeputative host specificity protein3e-136486
NC_011415:644811:6448116448116483083498Escherichia coli SE11 chromosome, complete genomeputative phage host specificity protein6e-136485
NC_016860:2716152:2732841273284127362033363Salmonella enterica subsp. enterica serovar Typhimurium strhost specificity protein2e-135484
NC_011080:2722492:2737465273746527408273363Salmonella enterica subsp. enterica serovar Newport str. SL254,host specificity protein2e-135484
NC_016810:2719779:2735120273512027384823363Salmonella enterica subsp. enterica serovar Typhimurium strbacteriophage protein2e-135484
NC_016856:2773995:2788962278896227923243363Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shost specificity protein-J-like protein2e-135484
NC_016857:2719779:2735120273512027384823363Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74host specificity protein2e-135484
NC_016863:2721826:2737167273716727405293363Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1host specificity protein-J-like protein2e-135484
NC_017046:2717810:2734499273449927378613363Salmonella enterica subsp. enterica serovar Typhimurium str. 798bacteriophage protein2e-135484
NC_011751:1446073:1446073144607314495553483Escherichia coli UMN026 chromosome, complete genomeHost specificity protein J of prophage5e-135483
NC_003197:2720726:2737516273751627407943279Salmonella typhimurium LT2, complete genomehost specificity protein-J-like4e-135483
NC_011353:2563056:2580617258061725840963480Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein4e-135483
NC_013856:595496:6139536139536183084356Azospirillum sp. B510 plasmid pAB510b, complete sequencehost specificity protein J3e-135483
NC_013364:1477248:1478165147816514816443480Escherichia coli O111:H- str. 11128, complete genomeputative host specificity protein6e-135482
NC_008563:1505405:1505405150540515088033399Escherichia coli APEC O1, complete genomeputative tail component of prophage2e-134481
NC_004431:3012668:3027710302771030311893480Escherichia coli CFT073, complete genomePutative tail component of prophage2e-134481
NC_011601:1466496:1466496146649614699693474Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehost specificity protein2e-134481
AP010958:2272919:2289069228906922925453477Escherichia coli O103:H2 str. 12009 DNA, complete genomeputative host specificity protein1e-134481
NC_013353:2272919:2289069228906922925453477Escherichia coli O103:H2 str. 12009, complete genomehost specificity protein1e-134481
NC_013361:1896446:1909356190935619128323477Escherichia coli O26:H11 str. 11368 chromosome, complete genomehost specificity protein1e-134481
NC_006905:1342474:1342474134247413458363363Salmonella enterica subsp. enterica serovar Choleraesuis strGifsy-1 prophage VhsJ9e-135481
NC_013941:1613595:1613595161359516170713477Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehost specificity protein3e-134480
NC_013364:2522888:2539826253982625433023477Escherichia coli O111:H- str. 11128, complete genomeputative host specificity protein6e-134479
NC_008563:2041345:2054544205454420580263483Escherichia coli APEC O1, complete genomeputative tail component of prophage4e-134479
NC_013364:863209:8762518762518797273477Escherichia coli O111:H- str. 11128, complete genomeputative host specificity protein4e-134479
NC_013364:3312379:3319743331974333232193477Escherichia coli O111:H- str. 11128, complete genomeputative host specificity protein8e-134478
NC_013361:3597812:3616693361669336201663474Escherichia coli O26:H11 str. 11368 chromosome, complete genomehost specificity protein8e-134478
NC_013364:1997891:2014345201434520178183474Escherichia coli O111:H- str. 11128, complete genomeputative host specificity protein1e-133478
NC_013361:1593543:1603601160360116070773477Escherichia coli O26:H11 str. 11368 chromosome, complete genomehost specificity protein2e-133477
AP010958:1305712:1306631130663113101043474Escherichia coli O103:H2 str. 12009 DNA, complete genomeputative host specificity protein2e-133477
NC_013353:1305712:1306631130663113101043474Escherichia coli O103:H2 str. 12009, complete genomehost specificity protein2e-133477
NC_013941:2425233:2442654244265424461303477Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehost specificity protein3e-133476
NC_013364:4990365:4990365499036549938413477Escherichia coli O111:H- str. 11128, complete genomeputative host specificity protein3e-133476
NC_013361:2169948:2174759217475921782353477Escherichia coli O26:H11 str. 11368 chromosome, complete genomehost specificity protein3e-133476
NC_011353:2892265:2894581289458128980543474Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein1e-132475
NC_013008:2889743:2894875289487528983483474Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehost specificity protein J1e-132475
NC_002695:1794635:1794635179463517981113477Escherichia coli O157:H7 str. Sakai, complete genomeputative host specificity protein7e-133475
NC_002655:2730659:2748365274836527518443480Escherichia coli O157:H7 EDL933, complete genomeputative tail fiber component J of prophage CP-933U6e-133475
NC_002655:1909139:1921846192184619253223477Escherichia coli O157:H7 EDL933, complete genomeputative tail component of prophage CP-933O1e-132474
NC_011745:1055354:1068370106837010719453576Escherichia coli ED1a chromosome, complete genomeHost specificity protein J from prophage6e-132472
NC_013008:1761165:1773175177317517766513477Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehost specificity protein J2e-131471
NC_011353:1761977:1774199177419917776753477Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein2e-131471
AP010958:1472506:1483138148313814865453408Escherichia coli O103:H2 str. 12009 DNA, complete genomeputative host specificity protein2e-130467
NC_013353:1472506:1483138148313814865453408Escherichia coli O103:H2 str. 12009, complete genomehost specificity protein2e-130467
NC_011745:2025725:2030659203065920342343576Escherichia coli ED1a chromosome, complete genomeHost specificity protein J (tail component) from phage origin2e-130467
NC_013508:2587913:2601250260125026043453096Edwardsiella tarda EIB202, complete genomephage-related protein, tail component4e-127456
NC_011894:3623500:36406163640616365118110566Methylobacterium nodulans ORS 2060, complete genomeFibronectin type III domain protein6e-127455
NC_011742:585908:5974935974936011853693Escherichia coli S88 chromosome, complete genomeHost specificity protein J3e-124446
NC_011751:1377457:1388977138897713926693693Escherichia coli UMN026 chromosome, complete genomeHost specificity protein J3e-123443
NC_004431:1352906:1364484136448413681763693Escherichia coli CFT073, complete genomePutative tail component of prophage1e-122441
NC_011750:1931384:1936675193667519404753801Escherichia coli IAI39 chromosome, complete genomeHost specificity protein J1e-122441
NC_011750:919953:9286379286379323293693Escherichia coli IAI39 chromosome, complete genomeHost specificity protein J4e-122439
NC_011094:638552:6443586443586475373180Salmonella enterica subsp. enterica serovar Schwarzengrund strgp291e-115418
NC_004578:4432983:4449313444931344520452733Pseudomonas syringae pv. tomato str. DC3000, complete genome2e-100367
NC_012967:531000:5518415518415546572817Escherichia coli B str. REL606 chromosome, complete genomeputative tail component of prophage4e-99363
NC_009800:1657550:1662058166205816647032646Escherichia coli HS, complete genomefibronectin type III domain protein9e-79295
NC_011353:1716037:1716856171685617197112856Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein2e-56221
NC_013008:1715831:1715831171583117186862856Escherichia coli O157:H7 str. TW14359 chromosome, complete genometail component of cryptic prophage CP-933P2e-56221
NC_016514:2476359:2491529249152924939732445Enterobacter cloacae EcWSU1 chromosome, complete genomehypothetical protein9e-52206
NC_010338:3743000:3773302377330237761842883Caulobacter sp. K31, complete genomePhage-related protein tail component-like protein1e-46189
NC_004129:3965947:397952539795253980187663Pseudomonas fluorescens Pf-5, complete genomeprophage LambdaSo, host specificity protein J, putative4e-44180
NC_002927:2338549:2367157236715723711133957Bordetella bronchiseptica RB50, complete genomehypothetical protein4e-29130
NC_002927:3716894:3728653372865337326093957Bordetella bronchiseptica RB50, complete genomehypothetical protein4e-29130
NC_002929:3568106:3577625357762535815813957Bordetella pertussis Tohama I, complete genomehypothetical protein2e-26122
NC_017223:3608749:3617810361781036217663957Bordetella pertussis CS chromosome, complete genomehypothetical protein2e-26122
NC_002937:1548081:1562738156273815650502313Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completetail fiber protein, truncation8e-1480.1
NC_014926:6652:1633816338187582421Thermovibrio ammonificans HB-1 chromosome, complete genomehypothetical protein2e-1275.1
NC_012967:1593101:1606613160661316079321320Escherichia coli B str. REL606 chromosome, complete genomeputative tail component of prophage2e-1172
NC_010404:55908:722937229372523231Acinetobacter baumannii plasmid p3ABAYE, complete sequencefragment of putative bacteriophage protein6e-1170.5
NC_010554:1008444:1018441101844110214703030Proteus mirabilis HI4320, complete genomephage tail protein5e-0860.8
NC_017047:3085000:3098344309834431016613318Rahnella aquatilis HX2 chromosome, complete genomehypothetical protein1e-0553.1