Pre_GI Gene

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Host: NC_004129 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004129:3965947 Pseudomonas fluorescens Pf-5, complete genome

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
39659473966327381lipoprotein putativeQuickGO ontology
396635539675871233oxidoreductase FMN-bindingQuickGO ontologyBLASTP
396767739687561080hypothetical proteinBLASTP
39690053969781777ThiJPfpI family proteinQuickGO ontologyBLASTP
39698703970796927hypothetical proteinBLASTP
39708123971291480transcriptional regulator MerR familyQuickGO ontologyBLASTP
39715273972357831esteraseQuickGO ontologyBLASTP
397373239748711140acetyltransferase GNAT family familyQuickGO ontologyBLASTP
39750173975400384hypothetical proteinBLASTP
39754683976445978hydrolase carbon-nitrogen familyQuickGO ontologyBLASTP
397648539779211437cytosinepurineuracilthiamineallantoin permease family proteinQuickGO ontologyBLASTP
39782003979129930transcriptional regulator LysR familyQuickGO ontologyBLASTP
39795253980187663prophage LambdaSo host specificity protein J putativeQuickGO ontologyBLASTP
3982048398212174tRNA-CysQuickGO ontologyBLASTP
398252739836271101putrescine ABC transporter periplasmic putrescine-binding proteinQuickGO ontologyBLASTP