Pre_GI Gene

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Host: NC_009800 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009800:1657550 Escherichia coli HS, complete genome

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
165755016613263777L-shaped tail fiber proteinQuickGO ontologyBLASTP
16613911661990600enterobacterial AilLom family proteinQuickGO ontologyBLASTP
166205816647032646fibronectin type III domain proteinQuickGO ontologyBLASTP
16650891665616528hypothetical proteinBLASTP
16666661666842177transcriptional regulator GnsAGnsB familyQuickGO ontologyBLASTP
16675141667729216cold shock DNA-binding proteinQuickGO ontologyBLASTP
16680901668587498hypothetical proteinBLASTP
16685841669117534phage lysozymeQuickGO ontologyBLASTP
16694391669990552hypothetical proteinBLASTP
16699951670210216lambda phage S protein familyQuickGO ontologyBLASTP
16704011671114714putative transcriptional regulator AraC familyQuickGO ontologyBLASTP
16715211672480960hypothetical proteinBLASTP
16733531673730378phage antitermination Q type 1 familyQuickGO ontologyBLASTP
16738451673955111hypothetical proteinBLASTP
16744581674961504IS1 transposase orfBQuickGO ontologyBLASTP
16748801675155276IS1 transposase orfAQuickGO ontologyBLASTP
16751841676050867starvation sensing protein RspBQuickGO ontologyBLASTP
167606216772761215starvation-sensing protein RspAQuickGO ontologyBLASTP
16774821677808327hypothetical proteinBLASTP
16779431678284342hypothetical proteinBLASTP
16783191678879561diamine N-acetyltransferaseQuickGO ontologyBLASTP
16788821679628747hypothetical proteinBLASTP
16797001680005306hypothetical proteinBLASTP
168020416826302427anaerobic dimethyl sulfoxide reductase A subunit YnfEQuickGO ontologyBLASTP
168269116851142424anaerobic dimethyl sulfoxide reductase A subunitQuickGO ontologyBLASTP
16851251685742618dimethylsulfoxide reductase B subunitQuickGO ontologyBLASTP