Pre_GI Gene

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Host: NC_004578 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004578:4432983 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
44329834433576594nitroreductase family proteinQuickGO ontologyBLASTP
44336524434584933D-isomer specific 2-hydroxyacid dehydrogenase family proteinQuickGO ontologyBLASTP
44346554434948294hypothetical proteinBLASTP
443494544360781134ribonuclease DQuickGO ontologyBLASTP
443628544379281644hypothetical proteinBLASTP
443816144398821722malate dehydrogenaseQuickGO ontologyBLASTP
44401654440647483gas vesicle protein putativeQuickGO ontologyBLASTP
44414024442067666hypothetical protein
44429004443118219cold shock domain family proteinQuickGO ontology
444312144443021182retron reverse transcriptaseQuickGO ontologyBLASTP
44453954445538144hypothetical protein
44455274446045519hypothetical protein
44460424446575534lysozyme putativeQuickGO ontologyBLASTP
44466364446914279tail fiber assembly domain proteinQuickGO ontologyBLASTP
44469074447263357hypothetical proteinBLASTP
44472634448261999tail fiber domain proteinQuickGO ontologyBLASTP
44482894448951663hypothetical protein
44489484449316369hypothetical proteinBLASTP
44534934454095603hypothetical proteinBLASTP
44541394454333195carbon storage regulator putativeQuickGO ontologyBLASTP
44543234455000678hypothetical protein
44549974455197201hypothetical protein
44552864455753468hypothetical proteinBLASTP
44557434456000258hypothetical proteinBLASTP
44559934456376384hypothetical protein