Pre_GI: BLASTP Hits

Some Help

Query: NC_004851:191709:221216 Shigella flexneri 2a str. 301 plasmid pCP301, complete sequence

Start: 221216, End: 221383, Length: 168

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007414:56508:883428834288845504Escherichia coli O157:H7 EDL933 plasmid pO157, complete sequencehypothetical protein3e-1373.9
NC_010498:2278306:228063322806332280959327Escherichia coli SMS-3-5, complete genomeIS629 transposase orfA4e-1373.6
NC_002695:1417912:143282714328271433153327Escherichia coli O157:H7 str. Sakai, complete genomeputative transposase3e-1373.6
AP010958:3669500:371848037184803718806327Escherichia coli O103:H2 str. 12009 DNA, complete genomeputative IS629 transposase OrfA3e-1373.6
NC_002655:1103991:112099311209931121319327Escherichia coli O157:H7 EDL933, complete genomeunknown in IS3e-1373.6
NC_011353:1307106:132132813213281321654327Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeIS629, transposase orfA3e-1373.6
NC_013008:1307392:132161413216141321940327Escherichia coli O157:H7 str. TW14359 chromosome, complete genometransposase3e-1373.6
NC_013008:1354988:137669913766991377025327Escherichia coli O157:H7 str. TW14359 chromosome, complete genometransposase3e-1373.6
NC_013353:3669500:371848037184803718806327Escherichia coli O103:H2 str. 12009, complete genomeIS629 transposase OrfA3e-1373.6
NC_007941:11319:166101661016936327Escherichia coli UTI89 plasmid pUTI89, complete sequenceputative transposase OrfA protein of insertion sequence IS6295e-1373.2
NC_011601:1114104:114489211448921145218327Escherichia coli O127:H6 str. E2348/69 chromosome, complete genometransposase Orf1 of IS6295e-1373.2
NC_011747:115864:127895127895128221327Escherichia coli S88 plasmid pECOS88, complete sequencetransposase ORF A, IS3 family, IS51 group5e-1373.2
NC_009837:155284:166955166955167293339Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequencehypothetical protein5e-1373.2
NC_010660:175200:196863196863197210348Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequencetransposase subfamily9e-1372.4
NC_007608:97092:116065116065116412348Shigella boydii Sb227 plasmid pSB4_227, complete sequenceIS629 ORF19e-1372.4
NC_004741:310382:331711331711331929219Shigella flexneri 2a str. 2457T, complete genomeIS629, orfA1e-1272
NC_007384:3741708:376064537606453760971327Shigella sonnei Ss046, complete genomeIS629 ORF11e-1272
NC_016822:2940000:294433429443342944660327Shigella sonnei 53G, complete genomeIS629 ORF11e-1272
NC_017328:335160:350414350414350659246Shigella flexneri 2002017 chromosome, complete genomeIS629 orfA1e-1272
NC_004337:309833:315478315478315804327Shigella flexneri 2a str. 301, complete genomeIS629 ORF11e-1271.6
NC_004337:3590323:381322738132273813553327Shigella flexneri 2a str. 301, complete genomeIS629 ORF11e-1271.6
NC_010660:86445:864458644586771327Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequenceIS629 transposase orfA1e-1271.6
NC_007941:11319:272922729227618327Escherichia coli UTI89 plasmid pUTI89, complete sequencehypothetical protein1e-1271.6
NC_008258:1934479:194104619410461941372327Shigella flexneri 5 str. 8401, complete genomeIS629 ORF11e-1271.6
NC_010660:175200:202109202109202435327Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequenceIS629 transposase orfA1e-1271.6
NC_010660:33109:366863668637012327Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequenceIS629 transposase orfA1e-1271.6
NC_010660:33109:506195061950945327Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequenceIS1203 transposase orfA1e-1271.6
NC_004337:309833:332469332469332795327Shigella flexneri 2a str. 301, complete genomeIS629 ORF11e-1271.6
NC_007946:4875997:488021248802124880538327Escherichia coli UTI89, complete genomehypothetical protein2e-1271.2
NC_008253:4817864:481875148187514819077327Escherichia coli 536, complete genomeputative transposase OrfA protein of insertion sequence IS6292e-1271.2
NC_011750:4775770:478289447828944783220327Escherichia coli IAI39 chromosome, complete genometransposase ORF A, IS6292e-1270.9
NC_011750:3545466:356210435621043562430327Escherichia coli IAI39 chromosome, complete genometransposase ORF A, IS6293e-1270.5
NC_013008:3525428:353972835397283540054327Escherichia coli O157:H7 str. TW14359 chromosome, complete genometransposase3e-1270.5
NC_013008:306953:316135316135316461327Escherichia coli O157:H7 str. TW14359 chromosome, complete genometransposase3e-1270.5
NC_013008:2910567:292660229266022926928327Escherichia coli O157:H7 str. TW14359 chromosome, complete genometransposase3e-1270.5
NC_013008:2851342:286950828695082869834327Escherichia coli O157:H7 str. TW14359 chromosome, complete genometransposase3e-1270.5
NC_011353:3573641:358485135848513585177327Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeIS629, transposase orfA3e-1270.5
NC_011353:2957962:297173129717312972057327Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeIS629, transposase orfA3e-1270.5
NC_002695:3852233:387026238702623870588327Escherichia coli O157:H7 str. Sakai, complete genomeputative transposase3e-1270.5
NC_002695:3468873:348074334807433481069327Escherichia coli O157:H7 str. Sakai, complete genomeputative transposase3e-1270.5
NC_002655:2730659:276154527615452761871327Escherichia coli O157:H7 EDL933, complete genomeunknown in IS629 encoded within prophage CP-933U3e-1270.5
NC_002655:3919545:393757539375753937901327Escherichia coli O157:H7 EDL933, complete genomeunknown protein in IS6293e-1270.5
NC_002655:3538656:355028035502803550606327Escherichia coli O157:H7 EDL933, complete genomeputative transposase3e-1270.5
NC_013008:3911356:392938539293853929711327Escherichia coli O157:H7 str. TW14359 chromosome, complete genometransposase3e-1270.5
NC_013364:1257801:127748712774871277813327Escherichia coli O111:H- str. 11128, complete genomeputative IS629 transposase OrfA3e-1270.5
NC_002695:2893951:291225629122562912582327Escherichia coli O157:H7 str. Sakai, complete genomeputative transposase3e-1270.5
NC_013364:5255700:527869052786905279016327Escherichia coli O111:H- str. 11128, complete genomeputative IS629 transposase OrfA3e-1270.5
NC_013364:5083949:508608050860805086406327Escherichia coli O111:H- str. 11128, complete genomeputative IS629 transposase OrfA3e-1270.5
NC_013364:4306000:431029643102964310622327Escherichia coli O111:H- str. 11128, complete genomeputative IS629 transposase OrfA3e-1270.5
NC_013364:3701895:375360637536063753932327Escherichia coli O111:H- str. 11128, complete genomeputative IS629 transposase OrfA3e-1270.5
NC_013364:3701895:370721737072173707543327Escherichia coli O111:H- str. 11128, complete genomeputative IS629 transposase OrfA3e-1270.5
NC_013364:3339768:334560233456023345928327Escherichia coli O111:H- str. 11128, complete genomeputative IS629 transposase OrfA3e-1270.5
NC_013364:3312379:333038233303823330708327Escherichia coli O111:H- str. 11128, complete genomeputative IS629 transposase OrfA3e-1270.5
NC_013364:2612822:263217226321722632498327Escherichia coli O111:H- str. 11128, complete genomeputative IS629 transposase OrfA3e-1270.5
NC_013364:2612822:261557926155792615905327Escherichia coli O111:H- str. 11128, complete genomeputative IS629 transposase OrfA3e-1270.5
NC_013364:1596278:160743416074341607760327Escherichia coli O111:H- str. 11128, complete genomeputative IS629 transposase OrfA3e-1270.5
AP010958:3787991:380434638043463804672327Escherichia coli O103:H2 str. 12009 DNA, complete genomeputative IS629 transposase OrfA4e-1270.1
AP010958:3474077:350112835011283501454327Escherichia coli O103:H2 str. 12009 DNA, complete genomeputative IS629 transposase OrfA4e-1270.1
AP010958:1711656:173105217310521731378327Escherichia coli O103:H2 str. 12009 DNA, complete genomeputative IS629 transposase OrfA4e-1270.1
AP010958:3669500:372123137212313721557327Escherichia coli O103:H2 str. 12009 DNA, complete genomeputative IS629 transposase OrfA4e-1270.1
AP010958:5090696:509214450921445092470327Escherichia coli O103:H2 str. 12009 DNA, complete genomeputative IS629 transposase OrfA4e-1270.1
NC_013353:1711656:173105217310521731378327Escherichia coli O103:H2 str. 12009, complete genomeIS629 transposase OrfA4e-1270.1
NC_013353:3474077:350112835011283501454327Escherichia coli O103:H2 str. 12009, complete genomeIS629 transposase OrfA4e-1270.1
NC_013353:3669500:372123137212313721557327Escherichia coli O103:H2 str. 12009, complete genomeIS629 transposase OrfA4e-1270.1
NC_013353:3787991:380434638043463804672327Escherichia coli O103:H2 str. 12009, complete genomeIS629 transposase OrfA4e-1270.1
NC_013353:5090696:509214450921445092470327Escherichia coli O103:H2 str. 12009, complete genomeIS629 transposase OrfA4e-1270.1
NC_010498:4856011:487075748707574871098342Escherichia coli SMS-3-5, complete genomeIS1203 transposase orfA4e-1270.1
NC_004431:4955658:496754449675444967870327Escherichia coli CFT073, complete genomeUnknown protein of IS629 encoded within prophage8e-1268.9
NC_011750:2585015:259042625904262590752327Escherichia coli IAI39 chromosome, complete genometransposase ORF A, IS6298e-1268.9
NC_011750:4978000:497935349793534979679327Escherichia coli IAI39 chromosome, complete genometransposase ORF A, IS6298e-1268.9
NC_004741:3041294:306735330673533067679327Shigella flexneri 2a str. 2457T, complete genomeIS629 orfA8e-1268.9
NC_011750:1978801:198579119857911986117327Escherichia coli IAI39 chromosome, complete genometransposase ORF A, IS6298e-1268.9
NC_011750:1849561:186610318661031866429327Escherichia coli IAI39 chromosome, complete genometransposase ORF A, IS6298e-1268.9
NC_011750:1931384:193227119322711932597327Escherichia coli IAI39 chromosome, complete genometransposase ORF A, IS6298e-1268.9
NC_004431:324000:332304332304332630327Escherichia coli CFT073, complete genomeUnknown protein of IS629 encoded within prophage8e-1268.9
NC_011750:5045927:506030950603095060635327Escherichia coli IAI39 chromosome, complete genometransposase ORF A, IS6298e-1268.9
NC_011750:1094000:110951611095161109842327Escherichia coli IAI39 chromosome, complete genometransposase ORF A, IS6298e-1268.9
NC_004431:1401681:141586714158671416193327Escherichia coli CFT073, complete genomeUnknown protein of IS629 encoded within prophage8e-1268.9
NC_017328:3088907:311496931149693115295327Shigella flexneri 2002017 chromosome, complete genomeIS629 orfA8e-1268.9
NC_017328:1075535:109424010942401094566327Shigella flexneri 2002017 chromosome, complete genomeIS629 orfA8e-1268.9
NC_011750:4947500:496014849601484960474327Escherichia coli IAI39 chromosome, complete genometransposase ORF A, IS6298e-1268.9
NC_011750:919953:922637922637922963327Escherichia coli IAI39 chromosome, complete genometransposase ORF A, IS6298e-1268.9
NC_011750:156799:160377160377160703327Escherichia coli IAI39 chromosome, complete genometransposase ORF A, IS6298e-1268.9
NC_011750:2928990:294686929468692947195327Escherichia coli IAI39 chromosome, complete genometransposase ORF A, IS6298e-1268.9
NC_004337:3049118:307517430751743075500327Shigella flexneri 2a str. 301, complete genomeIS629 ORF18e-1268.9
NC_004431:1211000:121339112133911213717327Escherichia coli CFT073, complete genomeUnknown protein of IS629 encoded within prophage8e-1268.9
NC_011750:527470:533785533785534111327Escherichia coli IAI39 chromosome, complete genometransposase ORF A, IS6298e-1268.9
NC_008563:3332114:334269633426963343022327Escherichia coli APEC O1, complete genomeputative transposase; OrfA protein of insertion sequence IS6292e-1168.2
NC_011742:3245500:325748032574803257806327Escherichia coli S88 chromosome, complete genometransposase ORF A, IS6292e-1168.2
CU928159:30700:413524135241600249Escherichia coli str. 55989 plasmid 55989p, complete genometransposase ORF A (fragment), IS6291e-1168.2
NC_011751:3453683:346420634642063464532327Escherichia coli UMN026 chromosome, complete genometransposase ORF A, IS6291e-1065.5
NC_004431:3409389:344014034401403440466327Escherichia coli CFT073, complete genomeHypothetical protein in IS1e-1065.5
NC_009788:16360:359333593336262330Escherichia coli E24377A plasmid pETEC_73, complete sequencehypothetical protein3e-0857
NC_003919:2824000:283036328303632830521159Xanthomonas axonopodis pv. citri str. 306, complete genometransposase5e-0856.6
NC_008752:3217695:322509532250953225418324Acidovorax avenae subsp. citrulli AAC00-1, complete genometransposase IS3/IS911 family protein1e-0755.1
NC_013722:1425588:143069914306991431022324Xanthomonas albilineans, complete genomeputative isxal1 transposase orf a protein2e-0754.7
NC_013722:1905655:191708719170871917410324Xanthomonas albilineans, complete genomeputative isxal1 transposase orf a protein2e-0754.7
NC_013722:1689125:169820316982031698526324Xanthomonas albilineans, complete genomeputative isxal1 transposase orf a protein2e-0754.7
NC_013722:3117442:311835031183503118673324Xanthomonas albilineans, complete genomeputative isxal1 transposase orf a protein2e-0754.7
NC_013722:2810721:282843328284332828756324Xanthomonas albilineans, complete genomeputative isxal1 transposase orf a protein2e-0754.7
NC_018691:359695:373805373805374128324Alcanivorax dieselolei B5 chromosome, complete genomeTransposase IS3/IS911 family protein3e-0753.9
NC_014153:2044500:205004020500402050363324Thiomonas intermedia K12 chromosome, complete genometransposase IS3/IS911 family protein5e-0753.1
NC_010801:481601:493276493276493599324Burkholderia multivorans ATCC 17616 chromosome 3, completeIS401 transposase7e-0752.8
NC_014931:2949697:296579629657962966119324Variovorax paradoxus EPS chromosome, complete genometransposase IS3/IS911 family protein7e-0752.8
NC_014931:4234288:424840642484064248729324Variovorax paradoxus EPS chromosome, complete genometransposase IS3/IS911 family protein7e-0752.8
NC_014931:4210029:421346742134674213790324Variovorax paradoxus EPS chromosome, complete genometransposase IS3/IS911 family protein7e-0752.8
NC_014931:5573942:558270455827045583027324Variovorax paradoxus EPS chromosome, complete genometransposase IS3/IS911 family protein7e-0752.8
NC_014931:2511423:252241325224132522736324Variovorax paradoxus EPS chromosome, complete genometransposase IS3/IS911 family protein7e-0752.8
NC_011992:1968258:198299819829981983717720Acidovorax ebreus TPSY, complete genomehypothetical protein7e-0752.8
NC_008314:1955793:196702519670251967336312Ralstonia eutropha H16 chromosome 2, complete sequenceTransposase IS4017e-0752.8
NC_019940:2485000:250137425013742501694321Thioflavicoccus mobilis 8321 chromosome, complete genometransposase8e-0752.4
NC_019940:2236630:225067622506762250996321Thioflavicoccus mobilis 8321 chromosome, complete genometransposase8e-0752.4
NC_015740:141910:143918143918144241324Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completehypothetical protein8e-0752.4
NC_015740:2614317:262962126296212629944324Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completehypothetical protein8e-0752.4
NC_008344:1:137861378614109324Nitrosomonas eutropha C91, complete genometransposase IS3/IS911 family protein3e-0650.8