Pre_GI: OUP Neighbours

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Query: NC_007576:435713 Lactobacillus sakei subsp. sakei 23K, complete genome

D: 35.5911

Host Lineage: Lactobacillus sakei; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: This strain (23K) was originally isolated from a French sausage. They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. Lactobacillus sakei is the predominant lactic acid bacteria found on fresh meat. This organism is used as a starter in the production of fermented meat products, and plays a major role in preserving meat products by inhibiting the growth of other bacteria.

Number of Neighbours: 159




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_004829:64000*Mycoplasma gallisepticum R, complete genome75.7108 %Subject Query16.3968
NC_016011:2875747Listeria ivanovii subsp. ivanovii PAM 55, complete genome75.5178 %Subject Query16.7194
NC_002953:303223Staphylococcus aureus subsp. aureus MSSA476, complete genome75.1195 %Subject Query17.0689
NC_015420:35384Lactobacillus buchneri NRRL B-30929 plasmid pLBUC01, complete77.451 %Subject Query17.7985
NC_015759:667505Weissella koreensis KACC 15510 chromosome, complete genome78.4896 %Subject Query18.218
NC_002162:138334*Ureaplasma parvum serovar 3 str. ATCC 700970, complete genome75.2696 %Subject Query18.4469
NC_007793:2086896Staphylococcus aureus subsp. aureus USA300, complete genome75.576 %Subject Query18.5372
NC_009782:2091815Staphylococcus aureus subsp. aureus Mu3, complete genome75.0582 %Subject Query18.7627
NC_002953:2032278Staphylococcus aureus subsp. aureus MSSA476, complete genome75.4442 %Subject Query19.3185
NC_003923:2053510Staphylococcus aureus subsp. aureus MW2, complete genome75.7322 %Subject Query19.3438
NC_004829:312750*Mycoplasma gallisepticum R, complete genome75.4197 %Subject Query19.3494
NC_002745:2018761Staphylococcus aureus subsp. aureus N315, complete genome75.6097 %Subject Query19.5161
NC_002953:2435667Staphylococcus aureus subsp. aureus MSSA476, complete genome75.0888 %Subject Query19.5558
NC_012121:139741*Staphylococcus carnosus subsp. carnosus TM300, complete genome75.0184 %Subject Query19.5674
NC_002952:494500Staphylococcus aureus subsp. aureus MRSA252, complete genome75.1869 %Subject Query19.6524
NC_015144:900000Weeksella virosa DSM 16922 chromosome, complete genome75.0061 %Subject Query19.6581
NC_015391:2099472Carnobacterium sp. 17-4 chromosome, complete genome77.0558 %Subject Query19.7896
NC_015144:124500Weeksella virosa DSM 16922 chromosome, complete genome75.5882 %Subject Query19.8444
NC_015978:113656Lactobacillus sanfranciscensis TMW 1.1304 chromosome, complete79.2984 %Subject Query19.9386
NC_015391:1013608*Carnobacterium sp. 17-4 chromosome, complete genome75.5637 %Subject Query19.9781
NC_015759:760671*Weissella koreensis KACC 15510 chromosome, complete genome76.1489 %Subject Query20.0163
NC_002973:505978Listeria monocytogenes str. 4b F2365, complete genome75.1379 %Subject Query20.1271
NC_014136:329484Leuconostoc kimchii IMSNU11154 chromosome, complete genome76.0968 %Subject Query20.2253
NC_007622:1842000*Staphylococcus aureus RF122, complete genome75.1808 %Subject Query20.635
NC_015391:2059191*Carnobacterium sp. 17-4 chromosome, complete genome75.8915 %Subject Query20.7322
NC_015978:1266196*Lactobacillus sanfranciscensis TMW 1.1304 chromosome, complete79.4822 %Subject Query20.8603
NC_015391:2488450Carnobacterium sp. 17-4 chromosome, complete genome76.7892 %Subject Query21.1758
NC_015978:32875Lactobacillus sanfranciscensis TMW 1.1304 chromosome, complete77.5827 %Subject Query21.308
NC_002973:72328*Listeria monocytogenes str. 4b F2365, complete genome75.1899 %Subject Query21.6136
NC_013891:575746Listeria seeligeri serovar 1/2b str. SLCC3954, complete genome75.5055 %Subject Query21.9659
NC_003210:2879906*Listeria monocytogenes EGD-e, complete genome77.4357 %Subject Query22.1972
NC_015428:21724Lactobacillus buchneri NRRL B-30929 chromosome, complete genome78.6152 %Subject Query22.2854
NC_015391:504227Carnobacterium sp. 17-4 chromosome, complete genome76.8536 %Subject Query22.3067
NC_003212:2837366Listeria innocua Clip11262, complete genome75.0031 %Subject Query22.3675
NC_015697:116000*Lactobacillus reuteri SD2112 chromosome, complete genome79.329 %Subject Query22.793
NC_008525:606986Pediococcus pentosaceus ATCC 25745, complete genome78.7377 %Subject Query22.793
NC_003212:2293425Listeria innocua Clip11262, complete genome75.2298 %Subject Query22.8265
NC_014041:3197192Zunongwangia profunda SM-A87 chromosome, complete genome75.2635 %Subject Query22.8538
NC_004606:877707Streptococcus pyogenes SSI-1, complete genome75.3493 %Subject Query22.9025
NC_008525:1013979Pediococcus pentosaceus ATCC 25745, complete genome76.9393 %Subject Query22.945
NC_010184:3213347Bacillus weihenstephanensis KBAB4, complete genome75.144 %Subject Query23.167
NC_015697:256000*Lactobacillus reuteri SD2112 chromosome, complete genome76.1765 %Subject Query23.2612
NC_015978:412856*Lactobacillus sanfranciscensis TMW 1.1304 chromosome, complete80.1471 %Subject Query23.2933
NC_008525:780500Pediococcus pentosaceus ATCC 25745, complete genome75.6526 %Subject Query24.0776
NC_015978:352478*Lactobacillus sanfranciscensis TMW 1.1304 chromosome, complete81.057 %Subject Query24.2022
NC_014319:1613611Leuconostoc gasicomitatum LMG 18811, complete genome76.1336 %Subject Query24.79
NC_009513:1065704*Lactobacillus reuteri F275, complete genome78.1005 %Subject Query24.8434
NC_007929:67810*Lactobacillus salivarius subsp. salivarius UCC118, complete genome75.1011 %Subject Query25.1229
NC_015601:71471*Erysipelothrix rhusiopathiae str. Fujisawa, complete genome75.3952 %Subject Query25.1267
NC_004668:3053119*Enterococcus faecalis V583, complete genome76.3756 %Subject Query25.4317
NC_015428:1544728*Lactobacillus buchneri NRRL B-30929 chromosome, complete genome79.424 %Subject ←→ Query25.6452
NC_010080:1885677Lactobacillus helveticus DPC 4571, complete genome76.8719 %Subject ←→ Query25.9241
NC_010080:1911932Lactobacillus helveticus DPC 4571, complete genome76.6575 %Subject ←→ Query25.9336
NC_010939:321492Actinobacillus pleuropneumoniae serovar 7 str. AP76, complete75.625 %Subject ←→ Query26.1819
NC_014334:369974Lactobacillus casei str. Zhang chromosome, complete genome75.2604 %Subject ←→ Query26.4531
NC_015460:2403004Gallibacterium anatis UMN179 chromosome, complete genome75.5423 %Subject ←→ Query26.4804
NC_014724:1731238*Lactobacillus amylovorus GRL 1112 chromosome, complete genome78.8572 %Subject ←→ Query26.547
NC_012913:280506Aggregatibacter aphrophilus NJ8700, complete genome77.3713 %Subject ←→ Query26.6691
NC_008525:1493317*Pediococcus pentosaceus ATCC 25745, complete genome79.6293 %Subject ←→ Query26.6901
NC_002940:1234410*Haemophilus ducreyi 35000HP, complete genome75.2175 %Subject ←→ Query26.6902
NC_015602:117939*Lactobacillus kefiranofaciens ZW3 chromosome, complete genome77.7482 %Subject ←→ Query26.7043
NC_014106:54587*Lactobacillus crispatus ST1, complete genome77.0772 %Subject ←→ Query26.719
NC_004668:2938000*Enterococcus faecalis V583, complete genome77.6226 %Subject ←→ Query26.7423
NC_008497:1575884*Lactobacillus brevis ATCC 367, complete genome77.3897 %Subject ←→ Query26.8361
NC_009513:1363987*Lactobacillus reuteri F275, complete genome79.6599 %Subject ←→ Query26.8839
NC_011744:1059600Vibrio splendidus LGP32 chromosome 2, complete genome77.9473 %Subject ←→ Query27.0315
NC_009513:303043*Lactobacillus reuteri F275, complete genome81.0478 %Subject ←→ Query27.0353
NC_011184:325797*Vibrio fischeri MJ11 chromosome I, complete sequence75.9375 %Subject ←→ Query27.0599
NC_015601:436822*Erysipelothrix rhusiopathiae str. Fujisawa, complete genome75.674 %Subject ←→ Query27.2486
NC_008530:469802*Lactobacillus gasseri ATCC 33323, complete genome76.2806 %Subject ←→ Query27.253
NC_006814:1618588*Lactobacillus acidophilus NCFM, complete genome76.5411 %Subject ←→ Query27.2785
NC_008526:1973500Lactobacillus casei ATCC 334, complete genome75.9283 %Subject ←→ Query27.286
NC_015978:996933*Lactobacillus sanfranciscensis TMW 1.1304 chromosome, complete76.155 %Subject ←→ Query27.3294
NC_012913:626449Aggregatibacter aphrophilus NJ8700, complete genome75.6342 %Subject ←→ Query27.3926
NC_010080:1685280*Lactobacillus helveticus DPC 4571, complete genome76.2684 %Subject ←→ Query27.4936
NC_008525:1202852*Pediococcus pentosaceus ATCC 25745, complete genome79.3045 %Subject ←→ Query27.6851
NC_007520:903799*Thiomicrospira crunogena XCL-2, complete genome76.011 %Subject ←→ Query27.7177
NC_015601:1107961*Erysipelothrix rhusiopathiae str. Fujisawa, complete genome75.3401 %Subject ←→ Query27.7922
NC_012984:1027898Lactobacillus plantarum JDM1, complete genome76.1458 %Subject ←→ Query27.8362
NC_012121:113912Staphylococcus carnosus subsp. carnosus TM300, complete genome75.4075 %Subject ←→ Query27.8663
NC_006814:403723*Lactobacillus acidophilus NCFM, complete genome79.2647 %Subject ←→ Query27.9291
NC_008525:561000Pediococcus pentosaceus ATCC 25745, complete genome79.9234 %Subject ←→ Query28.0034
NC_010080:445398*Lactobacillus helveticus DPC 4571, complete genome77.6869 %Subject ←→ Query28.0093
NC_008525:270310*Pediococcus pentosaceus ATCC 25745, complete genome81.921 %Subject ←→ Query28.0475
NC_014106:419511*Lactobacillus crispatus ST1, complete genome79.5864 %Subject ←→ Query28.0783
NC_015214:48999*Lactobacillus acidophilus 30SC chromosome, complete genome78.557 %Subject ←→ Query28.1689
NC_010939:1809446*Actinobacillus pleuropneumoniae serovar 7 str. AP76, complete75.7169 %Subject ←→ Query28.1766
NC_012984:3077004Lactobacillus plantarum JDM1, complete genome79.1728 %Subject ←→ Query28.2101
NC_010080:69000*Lactobacillus helveticus DPC 4571, complete genome75.6587 %Subject ←→ Query28.2732
NC_013798:345339*Streptococcus gallolyticus UCN34, complete genome76.1918 %Subject ←→ Query28.2969
NC_008497:1111891*Lactobacillus brevis ATCC 367, complete genome78.8787 %Subject ←→ Query28.4188
NC_008309:842072Haemophilus somnus 129PT, complete genome76.3695 %Subject ←→ Query28.533
NC_013895:1282566*Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, complete75.6403 %Subject ←→ Query28.6033
NC_013895:66641*Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, complete75.3615 %Subject ←→ Query28.6544
NC_013895:1086500*Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, complete75.3462 %Subject ←→ Query28.8667
NC_008309:190550Haemophilus somnus 129PT, complete genome77.0221 %Subject ←→ Query28.8791
NC_004668:2762464*Enterococcus faecalis V583, complete genome81.345 %Subject ←→ Query28.9547
NC_015660:3467579*Geobacillus thermoglucosidasius C56-YS93 chromosome, complete75.2696 %Subject ←→ Query28.9622
NC_012984:2709148Lactobacillus plantarum JDM1, complete genome79.1391 %Subject ←→ Query29.0035
NC_015697:1295412*Lactobacillus reuteri SD2112 chromosome, complete genome80.193 %Subject ←→ Query29.0596
NC_012984:2681548Lactobacillus plantarum JDM1, complete genome76.0172 %Subject ←→ Query29.4747
NC_012984:520000Lactobacillus plantarum JDM1, complete genome76.0447 %Subject ←→ Query29.4929
NC_013895:1203000Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, complete75.0276 %Subject ←→ Query29.5055
NC_009053:1785447*Actinobacillus pleuropneumoniae L20, complete genome75.723 %Subject ←→ Query29.5139
NC_008528:610070*Oenococcus oeni PSU-1, complete genome75.5239 %Subject ←→ Query29.6233
NC_013199:392450*Lactobacillus rhamnosus Lc 705, complete genome76.4798 %Subject ←→ Query29.6644
NC_012984:1074721Lactobacillus plantarum JDM1, complete genome77.2457 %Subject ←→ Query29.7281
NC_010999:623489Lactobacillus casei, complete genome75.8701 %Subject ←→ Query29.8391
NC_004605:1385444Vibrio parahaemolyticus RIMD 2210633 chromosome II, complete76.0968 %Subject ←→ Query29.9092
NC_013198:2458080Lactobacillus rhamnosus GG, complete genome75.4351 %Subject ←→ Query29.954
NC_004567:1066710Lactobacillus plantarum WCFS1, complete genome76.4461 %Subject ←→ Query29.9854
NC_015214:1700000*Lactobacillus acidophilus 30SC chromosome, complete genome79.1176 %Subject ←→ Query30.2107
NC_004668:1010610*Enterococcus faecalis V583, complete genome80.2819 %Subject ←→ Query30.421
NC_008528:1265542*Oenococcus oeni PSU-1, complete genome75.1317 %Subject ←→ Query30.4449
NC_009513:169146*Lactobacillus reuteri F275, complete genome81.4124 %Subject ←→ Query30.5164
NC_013199:2386924Lactobacillus rhamnosus Lc 705, complete genome76.8811 %Subject ←→ Query30.5957
NC_009053:1081651Actinobacillus pleuropneumoniae L20, complete genome75.4136 %Subject ←→ Query30.6172
NC_015602:1339067*Lactobacillus kefiranofaciens ZW3 chromosome, complete genome76.2469 %Subject ←→ Query30.661
NC_015602:1810500*Lactobacillus kefiranofaciens ZW3 chromosome, complete genome76.0417 %Subject ←→ Query30.7687
NC_004668:3156247*Enterococcus faecalis V583, complete genome80.6495 %Subject ←→ Query30.8008
NC_015697:1480552*Lactobacillus reuteri SD2112 chromosome, complete genome79.0135 %Subject ←→ Query30.867
NC_004567:343500Lactobacillus plantarum WCFS1, complete genome80.6311 %Subject ←→ Query30.9556
NC_007576:1564739*Lactobacillus sakei subsp. sakei 23K, complete genome86.5411 %Subject ←→ Query31.0118
NC_013198:394000*Lactobacillus rhamnosus GG, complete genome75.6556 %Subject ←→ Query31.056
NC_014724:439594*Lactobacillus amylovorus GRL 1112 chromosome, complete genome80.2237 %Subject ←→ Query31.0692
NC_008322:2077628*Shewanella sp. MR-7, complete genome75.7659 %Subject ←→ Query31.0943
NC_004567:1089231Lactobacillus plantarum WCFS1, complete genome75.2819 %Subject ←→ Query31.1476
NC_010611:3413333*Acinetobacter baumannii ACICU, complete genome75.5729 %Subject ←→ Query31.1907
NC_015428:1668465*Lactobacillus buchneri NRRL B-30929 chromosome, complete genome76.1029 %Subject ←→ Query31.3716
NC_015602:1949610Lactobacillus kefiranofaciens ZW3 chromosome, complete genome76.7218 %Subject ←→ Query31.6209
NC_004668:3184319*Enterococcus faecalis V583, complete genome78.1771 %Subject ←→ Query31.8458
NC_015697:321311*Lactobacillus reuteri SD2112 chromosome, complete genome79.8652 %Subject ←→ Query31.9917
NC_007576:471500*Lactobacillus sakei subsp. sakei 23K, complete genome85.9804 %Subject ←→ Query32.0931
NC_007576:299266*Lactobacillus sakei subsp. sakei 23K, complete genome85.4228 %Subject ←→ Query32.1055
NC_015697:1814128*Lactobacillus reuteri SD2112 chromosome, complete genome79.5496 %Subject ←→ Query32.1075
NC_015964:1389628*Haemophilus parainfluenzae T3T1, complete genome75.0705 %Subject ←→ Query32.1346
NC_009513:618000*Lactobacillus reuteri F275, complete genome79.4148 %Subject ←→ Query32.4327
NC_011026:2450325Chloroherpeton thalassium ATCC 35110, complete genome75.1287 %Subject ←→ Query32.4678
NC_015214:437733*Lactobacillus acidophilus 30SC chromosome, complete genome78.9185 %Subject ←→ Query32.6745
NC_013895:605488*Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, complete75.7966 %Subject ←→ Query32.8408
NC_014724:59000*Lactobacillus amylovorus GRL 1112 chromosome, complete genome78.2414 %Subject ←→ Query32.951
NC_008309:1628939*Haemophilus somnus 129PT, complete genome75.1379 %Subject ←→ Query32.9827
NC_015581:680460Thioalkalimicrobium cyclicum ALM1 chromosome, complete genome75.4718 %Subject ←→ Query33.4619
NC_013198:1538792*Lactobacillus rhamnosus GG, complete genome75.4013 %Subject ←→ Query33.5442
NC_013166:417862*Kangiella koreensis DSM 16069, complete genome75.4381 %Subject ←→ Query33.6007
NC_013199:2058857*Lactobacillus rhamnosus Lc 705, complete genome77.2151 %Subject ←→ Query33.7873
NC_006370:768745*Photobacterium profundum SS9 chromosome 1, complete sequence75.3615 %Subject ←→ Query33.9192
NC_015697:33665*Lactobacillus reuteri SD2112 chromosome, complete genome79.9357 %Subject ←→ Query33.9576
NC_003910:2588000Colwellia psychrerythraea 34H, complete genome75.674 %Subject ←→ Query34.4966
NC_004668:241352*Enterococcus faecalis V583, complete genome82.3039 %Subject ←→ Query34.8042
NC_008525:664500*Pediococcus pentosaceus ATCC 25745, complete genome81.2071 %Subject ←→ Query34.8304
NC_008321:1993541*Shewanella sp. MR-4, complete genome76.2592 %Subject ←→ Query34.9743
NC_013198:2088780*Lactobacillus rhamnosus GG, complete genome78.2047 %Subject ←→ Query35.0489
NC_006371:1997954*Photobacterium profundum SS9 chromosome 2, complete sequence75.1532 %Subject ←→ Query35.2715
NC_007520:1627978*Thiomicrospira crunogena XCL-2, complete genome77.9657 %Subject ←→ Query35.293
NC_012121:1444633*Staphylococcus carnosus subsp. carnosus TM300, complete genome75.8211 %Subject ←→ Query37.3005
NC_010610:755000*Lactobacillus fermentum IFO 3956, complete genome78.1036 %Subject ←→ Query39.2062
NC_010610:2013659Lactobacillus fermentum IFO 3956, complete genome75.239 %Subject ←→ Query43.0803
NC_010610:1580483*Lactobacillus fermentum IFO 3956, complete genome78.3548 %Subject ←→ Query44.2348