Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010001: Clostridium phytofermentans ISDg, complete genome

NCBI: NC_010001

Host Lineage: Lachnoclostridium phytofermentans; Lachnoclostridium; Lachnospiraceae; Clostridiales; Firmicutes; Bacteria

General Information: Isolated from forest soil near the Quabbin Reservoir in Massachusetts, USA. This organism plays an important industrial and ecological role in the anaerobic fermentation of cellulose and produces economically significant levels of acetate and ethanol. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*2082320823Island text2.0648619.166536.4052Neighbours21BLASTN1.gbk
269000*9209923100Island text3.7100124.3743.0402Neighbours21BLASTN69000.gbk
3109893*13490225010Island text1.6566417.37627.8536Neighbours21BLASTN+109893.gbk
423297625471621741Island text1.6888121.365823.3907Neighbours21BLASTN+IslandViewer 232976.gbk
5312500*33209919600Island text2.0236121.282235.3015Neighbours21BLASTN312500.gbk
640406642359919534Island text2.017919.792135.7413Neighbours21BLASTN404066.gbk
7434803*46465129849Island text4.1744626.660145.8019Neighbours21BLASTN+434803.gbk
847335449159918246Island text2.09319.81442.5326Neighbours21BLASTN473354.gbk
9615427*63829122865Island text1.9698220.867337.7365Neighbours21BLASTN615427.gbk
10649000*66890119902Island text2.2018819.728836.6031Neighbours21BLASTN649000.gbk
1185167187859926929Island text1.677426.127325.7077Neighbours21+IslandViewer 851671.gbk
1290250692609923594Island text1.9337520.139237.5868Neighbours21BLASTNIslandViewer 902506.gbk
13986500101283326334Island text1.7158723.76931.4465Neighbours21+IslandViewer 986500.gbk
141452167*147370421538Island text1.5548320.901529.5773Neighbours21BLASTN+1452167.gbk
151488000151119123192Island text2.3260721.422438.1768Neighbours21BLASTN+1488000.gbk
161702350*172919826849Island text2.1124521.955538.6892Neighbours21BLASTN+1702350.gbk
171745089177589430806Island text2.0866625.63733.2659Neighbours21BLASTN+1745089.gbk
181806000182359917600Island text1.6941118.333529.6017Neighbours21BLASTN+IslandViewer 1806000.gbk
191884500*190470920210Island text1.9723421.270129.5615Neighbours21BLASTN+1884500.gbk
201917456193630718852Island text2.7137820.115933.7069Neighbours21BLASTN+1917456.gbk
212125500215613130632Island text1.819722.064529.9646Neighbours21BLASTN2125500.gbk
222176394219780121408Island text1.5784623.134419.3923Neighbours21BLASTN2176394.gbk
232836995*286257025576Island text1.9345920.133136.5574Neighbours21BLASTN+2836995.gbk
243266561*328620519645Island text2.6766519.288137.0325Neighbours21BLASTN3266561.gbk
253369500*339588026381Island text2.5911424.007641.4137Neighbours21BLASTN+3369500.gbk
263421710344570323994Island text1.4166725.024332.7202Neighbours21BLASTN3421710.gbk
273473425*349706823644Island text2.8667923.017436.6188Neighbours21BLASTN+3473425.gbk
283614314*364609931786Island text2.3906620.435535.9612Neighbours21BLASTN+3614314.gbk
293895264391714521882Island text2.7182421.403132.5305Neighbours21BLASTN+3895264.gbk
304128034*415394725914Island text3.8324725.501143.4392Neighbours21BLASTN4128034.gbk
314168817*418959920783Island text3.9549626.022643.3367Neighbours21BLASTN+4168817.gbk
324250828427265121824Island text2.4447419.468737.1613Neighbours21BLASTN4250828.gbk
334486170*451730531136Island text2.003522.894736.3163Neighbours21BLASTN+4486170.gbk
344520979*454309922121Island text1.6199122.526635.7778Neighbours21BLASTN+4520979.gbk
354586000460866422665Island text1.8131418.768234.3221Neighbours21BLASTN4586000.gbk
364703500472653823039Island text2.2181220.98834.1982Neighbours21BLASTN+4703500.gbk
374730000*475568925690Island text2.6383124.721435.0046Neighbours21BLASTN+4730000.gbk