Pre_GI Gene

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Host: NC_010001 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_010001:1884500 Clostridium phytofermentans ISDg, complete genome

Host Lineage: Lachnoclostridium phytofermentans; Lachnoclostridium; Lachnospiraceae; Clostridiales; Firmicutes; Bacteria

General Information: Isolated from forest soil near the Quabbin Reservoir in Massachusetts, USA. This organism plays an important industrial and ecological role in the anaerobic fermentation of cellulose and produces economically significant levels of acetate and ethanol. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
188462618865001875arginyl-tRNA synthetaseQuickGO ontologyBLASTP
18866691887664996NUDIX hydrolaseQuickGO ontologyBLASTP
18876771888474798Xylose isomerase domain protein TIM barrelQuickGO ontologyBLASTP
188874718898291083glycine cleavage system T proteinQuickGO ontologyBLASTP
18898551890238384glycine cleavage system H proteinQuickGO ontologyBLASTP
189025218915711320Glycine dehydrogenase decarboxylatingQuickGO ontologyBLASTP
189157618930361461Glycine dehydrogenase decarboxylatingQuickGO ontologyBLASTP
18930201894018999lipoyltransferase and lipoate-protein ligaseQuickGO ontologyBLASTP
189423718956491413dihydrolipoamide dehydrogenaseQuickGO ontologyBLASTP
189604518979521908helicase c2QuickGO ontologyBLASTP
18980311898312282protein of unknown function DUF503QuickGO ontologyBLASTP
18985941899421828transcriptional regulator AraC familyQuickGO ontologyBLASTP
189963219010681437binding-protein-dependent transport systems inner membrane componentQuickGO ontologyBLASTP
19011461902138993binding-protein-dependent transport systems inner membrane componentQuickGO ontologyBLASTP
190225019040371788hypothetical proteinBLASTP
19040981904709612hypothetical proteinBLASTP