Pre_GI Gene

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Host: NC_010001 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_010001:615427 Clostridium phytofermentans ISDg, complete genome

Host Lineage: Lachnoclostridium phytofermentans; Lachnoclostridium; Lachnospiraceae; Clostridiales; Firmicutes; Bacteria

General Information: Isolated from forest soil near the Quabbin Reservoir in Massachusetts, USA. This organism plays an important industrial and ecological role in the anaerobic fermentation of cellulose and produces economically significant levels of acetate and ethanol. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
6154276171031677extracellular solute-binding protein family 1QuickGO ontologyBLASTP
6172676195522286Heparinase IIIII family proteinQuickGO ontologyBLASTP
6195726214401869Heparinase IIIII family proteinQuickGO ontologyBLASTP
621481622278798short-chain dehydrogenasereductase SDRQuickGO ontologyBLASTP
622395623030636Ribosegalactose isomeraseQuickGO ontologyBLASTP
6230466277164671Alginate lyase 2QuickGO ontologyBLASTP
6279456301252181methyl-accepting chemotaxis sensory transducerQuickGO ontologyBLASTP
6303576317541398extracellular solute-binding protein family 1QuickGO ontologyBLASTP
6319016337151815histidine kinase internal regionQuickGO ontologyBLASTP
6338106354411632two component transcriptional regulator AraC familyQuickGO ontologyBLASTP
6355686382912724glycosyl transferase family 51QuickGO ontologyBLASTP