Pre_GI Gene

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Host: NC_010001 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_010001:3266561 Clostridium phytofermentans ISDg, complete genome

Host Lineage: Lachnoclostridium phytofermentans; Lachnoclostridium; Lachnospiraceae; Clostridiales; Firmicutes; Bacteria

General Information: Isolated from forest soil near the Quabbin Reservoir in Massachusetts, USA. This organism plays an important industrial and ecological role in the anaerobic fermentation of cellulose and produces economically significant levels of acetate and ethanol. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
326656132679551395Radical SAM domain proteinQuickGO ontologyBLASTP
32684693269269801ribonuclease BNQuickGO ontologyBLASTP
32693393270271933translation elongation factor TsQuickGO ontologyBLASTP
32704853271225741ribosomal protein S2QuickGO ontologyBLASTP
32714673272234768hypothetical protein
32723563273069714hypothetical proteinBLASTP
32730883273411324hypothetical protein
327343932750371599protein of unknown function DUF342QuickGO ontologyBLASTP
32751193275883765RNA polymerase sigma 28 subunit FliAWhiGQuickGO ontologyBLASTP
32759153276238324hypothetical protein
32762913276776486CheDQuickGO ontologyBLASTP
32767843277401618CheC inhibitor of MCP methylationQuickGO ontologyBLASTP
32774803277947468CheW proteinQuickGO ontologyBLASTP
327796032800532094CheA signal transduction histidine kinaseQuickGO ontologyBLASTP
328005532811731119response regulator receiver modulated CheB methylesteraseQuickGO ontologyBLASTP
32812883282049762type IV pilus assembly PilZQuickGO ontologyBLASTP
32820763282957882Cobyrinic acid ac-diamide synthaseQuickGO ontologyBLASTP
328295832841721215GTP-binding signal recognition particle SRP54 G- domainQuickGO ontologyBLASTP
328417232862052034flagellar biosynthesis protein FlhAQuickGO ontologyBLASTP