Pre_GI Gene

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Host: NC_010001 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_010001:902506 Clostridium phytofermentans ISDg, complete genome

Host Lineage: Lachnoclostridium phytofermentans; Lachnoclostridium; Lachnospiraceae; Clostridiales; Firmicutes; Bacteria

General Information: Isolated from forest soil near the Quabbin Reservoir in Massachusetts, USA. This organism plays an important industrial and ecological role in the anaerobic fermentation of cellulose and produces economically significant levels of acetate and ethanol. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
9025069040501545extracellular solute-binding protein family 1QuickGO ontologyBLASTP
9041249051611038transcriptional regulator LacI familyQuickGO ontologyBLASTP
9052989075292232glycoside hydrolase family 3 domain proteinQuickGO ontologyBLASTP
907805908227423protein of unknown function DUF296QuickGO ontologyBLASTP
908541909215675hypothetical proteinBLASTP
909243909911669hypothetical proteinBLASTP
9099419119321992Spore coat protein CotHQuickGO ontologyBLASTP
911972912658687two component transcriptional regulator winged helix familyQuickGO ontologyBLASTP
9126629139601299integral membrane sensor signal transduction histidine kinaseQuickGO ontologyBLASTP
914234914629396LrgA family proteinQuickGO ontologyBLASTP
914626915318693LrgB family proteinQuickGO ontologyBLASTP
9154059195504146DEADDEAH box helicase domain proteinQuickGO ontologyBLASTP
919637920515879transcriptional regulator AraC familyQuickGO ontologyBLASTP
9208949219131020NAD-dependent epimerasedehydrataseQuickGO ontologyBLASTP
9221399240191881glycoside hydrolase family 2 sugar bindingQuickGO ontologyBLASTP
924369925250882hypothetical proteinBLASTP
925284926060777zinciron permeaseQuickGO ontologyBLASTP