Pre_GI Gene

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Host: NC_010001 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_010001:109893 Clostridium phytofermentans ISDg, complete genome

Host Lineage: Lachnoclostridium phytofermentans; Lachnoclostridium; Lachnospiraceae; Clostridiales; Firmicutes; Bacteria

General Information: Isolated from forest soil near the Quabbin Reservoir in Massachusetts, USA. This organism plays an important industrial and ecological role in the anaerobic fermentation of cellulose and produces economically significant levels of acetate and ethanol. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
109893110531639two component transcriptional regulator LuxR familyQuickGO ontologyBLASTP
110768111313546RubrerythrinQuickGO ontologyBLASTP
111417111740324protein of unknown function DUF1540QuickGO ontology
111752112369618flavin reductase domain protein FMN-bindingQuickGO ontologyBLASTP
1128921139141023D-alanine--D-alanine ligaseQuickGO ontologyBLASTP
114069115049981hypothetical protein
115163115348186hypothetical protein
1154371171401704hydrogenase Fe-onlyQuickGO ontologyBLASTP
1171581190441887NADH dehydrogenase quinoneQuickGO ontologyBLASTP
119038119523486NADH dehydrogenase ubiquinone 24 kDa subunitQuickGO ontologyBLASTP
1200331214871455Ferredoxin hydrogenaseQuickGO ontologyBLASTP
1215341227061173protein serinethreonine phosphataseQuickGO ontologyBLASTP
1227551244881734putative PASPAC sensor proteinQuickGO ontologyBLASTP
124488124730243hypothetical proteinBLASTP
124837125703867DegV family proteinQuickGO ontologyBLASTP
1263111277291419asparaginyl-tRNA synthetaseQuickGO ontologyBLASTP
127890128408519protein of unknown function DUF988QuickGO ontologyBLASTP
129389129880492transcriptional regulator XRE familyQuickGO ontologyBLASTP
130233131072840transcriptional regulator MerR familyQuickGO ontologyBLASTP
1314241331511728ABC transporter relatedQuickGO ontologyBLASTP
1331481349021755ABC transporter relatedQuickGO ontologyBLASTP