Pre_GI Gene

Some Help

Host: NC_010001 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_010001:4168817 Clostridium phytofermentans ISDg, complete genome

Host Lineage: Lachnoclostridium phytofermentans; Lachnoclostridium; Lachnospiraceae; Clostridiales; Firmicutes; Bacteria

General Information: Isolated from forest soil near the Quabbin Reservoir in Massachusetts, USA. This organism plays an important industrial and ecological role in the anaerobic fermentation of cellulose and produces economically significant levels of acetate and ethanol. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
416881741706281812histidine kinase internal regionQuickGO ontologyBLASTP
41707114171556846binding-protein-dependent transport systems inner membrane componentQuickGO ontologyBLASTP
41715644172445882binding-protein-dependent transport systems inner membrane componentQuickGO ontologyBLASTP
417266141740161356extracellular solute-binding protein family 1QuickGO ontologyBLASTP
41742314174890660hypothetical protein
41753414178240290023S ribosomal RNAQuickGO ontologyBLASTP
417872241788381175S ribosomal RNAQuickGO ontologyBLASTP
41789794180501152316S ribosomal RNAQuickGO ontologyBLASTP
41813574184256290023S ribosomal RNAQuickGO ontologyBLASTP
418473841848541175S ribosomal RNAQuickGO ontologyBLASTP
41849404186462152316S ribosomal RNAQuickGO ontologyBLASTP
41874604188086627hypothetical proteinBLASTP
418811741893341218FAD-dependent pyridine nucleotide-disulphide oxidoreductaseQuickGO ontologyBLASTP