Pre_GI Gene

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Host: NC_010001 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_010001:4730000 Clostridium phytofermentans ISDg, complete genome

Host Lineage: Lachnoclostridium phytofermentans; Lachnoclostridium; Lachnospiraceae; Clostridiales; Firmicutes; Bacteria

General Information: Isolated from forest soil near the Quabbin Reservoir in Massachusetts, USA. This organism plays an important industrial and ecological role in the anaerobic fermentation of cellulose and produces economically significant levels of acetate and ethanol. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
473002147317661746signal transduction histidine kinase LytSQuickGO ontologyBLASTP
473186747332161350extracellular solute-binding protein family 1QuickGO ontologyBLASTP
47333544734235882binding-protein-dependent transport systems inner membrane componentQuickGO ontologyBLASTP
47342484735123876binding-protein-dependent transport systems inner membrane componentQuickGO ontologyBLASTP
47353804736159780two component transcriptional regulator AraC familyQuickGO ontologyBLASTP
4736356473642671tRNA-GlyQuickGO ontology
473692547442987374Endo-14-beta-xylanaseQuickGO ontologyBLASTP
47443764745365990ABC transporter relatedQuickGO ontologyBLASTP
47453674746149783protein of unknown function DUF990QuickGO ontologyBLASTP
47463614747179819protein of unknown function DUF990QuickGO ontologyBLASTP
474718247483481167beta-lactamaseQuickGO ontologyBLASTP
474882247505401719methyl-accepting chemotaxis sensory transducerQuickGO ontologyBLASTP
475073247511934625-Nitroimidazole antibiotic resistance proteinQuickGO ontologyBLASTP
475139447556894296Fibronectin type III domain proteinQuickGO ontologyBLASTP