Pre_GI Gene

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Host: NC_010001 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_010001:3473425 Clostridium phytofermentans ISDg, complete genome

Host Lineage: Lachnoclostridium phytofermentans; Lachnoclostridium; Lachnospiraceae; Clostridiales; Firmicutes; Bacteria

General Information: Isolated from forest soil near the Quabbin Reservoir in Massachusetts, USA. This organism plays an important industrial and ecological role in the anaerobic fermentation of cellulose and produces economically significant levels of acetate and ethanol. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
347342534752931869hypothetical proteinBLASTP
34753263476234909response regulator receiver modulated CheW proteinQuickGO ontologyBLASTP
347682434782061383Cysteine desulfuraseQuickGO ontologyBLASTP
3478584347865572tRNA-GluQuickGO ontologyBLASTP
34787373481636290023S ribosomal RNAQuickGO ontologyBLASTP
348198234820981175S ribosomal RNAQuickGO ontologyBLASTP
34822373483759152316S ribosomal RNAQuickGO ontologyBLASTP
348485234860421191hypothetical proteinBLASTP
348635934882241866hybrid cluster proteinQuickGO ontologyBLASTP
348873734902451509hybrid cluster proteinQuickGO ontologyBLASTP
349064134921041464glycoside hydrolase family 4QuickGO ontologyBLASTP
34923143493177864NLPP60 proteinQuickGO ontologyBLASTP
34931773493494318phage holin LL-H familyQuickGO ontology
34941693497068290023S ribosomal RNAQuickGO ontologyBLASTP