Pre_GI Gene

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Host: NC_010001 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_010001:1 Clostridium phytofermentans ISDg, complete genome

Host Lineage: Lachnoclostridium phytofermentans; Lachnoclostridium; Lachnospiraceae; Clostridiales; Firmicutes; Bacteria

General Information: Isolated from forest soil near the Quabbin Reservoir in Massachusetts, USA. This organism plays an important industrial and ecological role in the anaerobic fermentation of cellulose and produces economically significant levels of acetate and ethanol. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
7514361362chromosomal replication initiator protein DnaAQuickGO ontologyBLASTP
184929611113DNA polymerase III beta subunitQuickGO ontologyBLASTP
30993314216RNA-binding S4 domain proteinQuickGO ontologyBLASTP
387049521083DNA replication and repair protein RecFQuickGO ontologyBLASTP
498669141929DNA gyrase B subunitQuickGO ontologyBLASTP
693296312700DNA gyrase A subunitQuickGO ontologyBLASTP
991110753843hydro-lyase Fe-S type tartratefumarate subfamily alpha subunitQuickGO ontologyBLASTP
1080711355549hydro-lyase Fe-S type tartratefumarate subfamily beta subunitQuickGO ontologyBLASTP
1143411871438transcriptional regulator BadMRrf2 familyQuickGO ontologyBLASTP
12344136301287O-acetylhomoserineO-acetylserine sulfhydrylaseQuickGO ontologyBLASTP
1367214604933cysteine synthase AQuickGO ontologyBLASTP
151461523388tRNA-SerQuickGO ontologyBLASTP
1575417276152316S ribosomal RNAQuickGO ontologyBLASTP
17450175661175S ribosomal RNAQuickGO ontologyBLASTP
1792420823290023S ribosomal RNAQuickGO ontologyBLASTP