Pre_GI Gene

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Host: NC_010001 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_010001:2125500 Clostridium phytofermentans ISDg, complete genome

Host Lineage: Lachnoclostridium phytofermentans; Lachnoclostridium; Lachnospiraceae; Clostridiales; Firmicutes; Bacteria

General Information: Isolated from forest soil near the Quabbin Reservoir in Massachusetts, USA. This organism plays an important industrial and ecological role in the anaerobic fermentation of cellulose and produces economically significant levels of acetate and ethanol. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
21255272125907381Domain of unknown function DUF1801QuickGO ontology
212609321271091017hypothetical proteinBLASTP
21272622127525264hypothetical proteinBLASTP
21279562128729774Ku proteinQuickGO ontologyBLASTP
212873421311752442DNA ligase DQuickGO ontologyBLASTP
213151721334301914NADH dehydrogenase quinoneQuickGO ontologyBLASTP
21334302134290861respiratory-chain NADH dehydrogenase subunit 1QuickGO ontologyBLASTP
21343842134818435NADH ubiquinone oxidoreductase 20 kDa subunitQuickGO ontologyBLASTP
21348712135224354Ech hydrogenase subunit EchD putativeQuickGO ontologyBLASTP
213522421363031080NADH-ubiquinone oxidoreductase chain 49kDaQuickGO ontologyBLASTP
213642321367853634Fe-4S ferredoxin iron-sulfur binding domain proteinQuickGO ontologyBLASTP
21367552137093339hydrogenase expressionsynthesis HypAQuickGO ontologyBLASTP
21371352137785651hydrogenase accessory protein HypBQuickGO ontologyBLASTP
213781221401902379NiFe hydrogenase maturation protein HypFQuickGO ontologyBLASTP
21402512140478228hydrogenase assembly chaperone hypChupFQuickGO ontologyBLASTP
214046521415111047hydrogenase formation HypD proteinQuickGO ontologyBLASTP
21415952142572978hydrogenase expressionformation protein HypEQuickGO ontologyBLASTP
214286021444221563transcriptional regulator CdaRQuickGO ontologyBLASTP
214461621474292814NADHflavin oxidoreductaseNADH oxidaseQuickGO ontologyBLASTP
21474852148261777short-chain dehydrogenasereductase SDRQuickGO ontologyBLASTP
214857021496251056methylated-DNA--protein-cysteine methyltransferaseQuickGO ontologyBLASTP
214990121508879873-carboxymuconate cyclase-like proteinQuickGO ontologyBLASTP
215143421561314698peptidase S8 and S53 subtilisin kexin sedolisinQuickGO ontologyBLASTP