Pre_GI: BLASTN Hits

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Query: NC_013716:4824541 Citrobacter rodentium ICC168, complete genome

Start: 4824541, End: 4848306, Length: 23766

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_013716:27645502764550279838233833Citrobacter rodentium ICC168, complete genome05529BLASTN svgBLASTP svg
NC_013716:4306695*4306695439827491580Citrobacter rodentium ICC168, complete genome05388BLASTN svgBLASTP svg
NC_013716:33278813327881336492937049Citrobacter rodentium ICC168, complete genome05311BLASTN svgBLASTP svg
NC_013716:24763342476334249822421891Citrobacter rodentium ICC168, complete genome05311BLASTN svgBLASTP svg
NC_013716:37084153708415373077822364Citrobacter rodentium ICC168, complete genome05309BLASTN svgBLASTP svg
NC_013716:1138441*1138441116841529975Citrobacter rodentium ICC168, complete genome05309BLASTN svgBLASTP svg
NC_009801:3374501*3374501339880324303Escherichia coli E24377A, complete genome04867BLASTN svgBLASTP svg
NC_009790:42112421126914727036Escherichia coli E24377A plasmid pETEC_74, complete sequence04865BLASTN svgBLASTP svg
NC_009801:17566101756610177871522106Escherichia coli E24377A, complete genome04351BLASTN svgBLASTP svg
NC_013716:5201097*5201097527659975503Citrobacter rodentium ICC168, complete genome03590BLASTN svgBLASTP svg
NC_008253:334467*33446741611981653Escherichia coli 536, complete genome01590BLASTN svgBLASTP svg
NC_011748:4792703*4792703481092818226Escherichia coli 55989, complete genome01576BLASTN svgBLASTP svg
CU928145:4792703*4792703481092818226Escherichia coli 55989 chromosome, complete genome01576BLASTN svgBLASTP svg
NC_004337:3049118*3049118311609966982Shigella flexneri 2a str. 301, complete genome01132BLASTN svgBLASTP svg
NC_004741:3041294*3041294310468963396Shigella flexneri 2a str. 2457T, complete genome01132BLASTN svgBLASTP svg
NC_007385:15751615751617664619131Shigella sonnei Ss046 plasmid pSS_046, complete sequence7e-155555BLASTN svgBLASTP svg
NC_007607:870008700012362836629Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequence1e-147531BLASTN svgBLASTP svg
NC_010660:33109331095109917991Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence1e-97365BLASTN svgBLASTP svg
NC_009788:16360163603711520756Escherichia coli E24377A plasmid pETEC_73, complete sequence1e-88335BLASTN svgBLASTP svg
NC_008253:47354184735418477925943842Escherichia coli 536, complete genome3e-83317BLASTN svgBLASTP svg
NC_010468:1816359*1816359186342947071Escherichia coli ATCC 8739, complete genome1e-73285BLASTN svgBLASTP svg
CP002185:79473279473281843123700Escherichia coli W, complete genome2e-69272BLASTN svgBLASTP svg
NC_011748:41319244131924415503823115Escherichia coli 55989, complete genome4e-67264BLASTN svgBLASTP svg
NC_009801:40739684073968409617422207Escherichia coli E24377A, complete genome4e-67264BLASTN svgBLASTP svg
CU928145:41319244131924415503823115Escherichia coli 55989 chromosome, complete genome4e-67264BLASTN svgBLASTP svg
CP002516:119935*11993514694827014Escherichia coli KO11, complete genome4e-67264BLASTN svgBLASTP svg
CP002185:39645003964500398613821639Escherichia coli W, complete genome4e-67264BLASTN svgBLASTP svg
NC_010468:32093263209326323524825923Escherichia coli ATCC 8739, complete genome9e-65256BLASTN svgBLASTP svg
AP010958:4707712*4707712472598018269Escherichia coli O103:H2 str. 12009 DNA, complete genome9e-65256BLASTN svgBLASTP svg
NC_010468:111504*11150413814926646Escherichia coli ATCC 8739, complete genome4e-64254BLASTN svgBLASTP svg
NC_014839:68308683089375025443Pantoea sp. At-9b plasmid pPAT9B02, complete sequence1e-63252BLASTN svgBLASTP svg
AC_000091:39952333995233402122325991Escherichia coli W3110 DNA, complete genome9e-62246BLASTN svgBLASTP svg
NC_007384:17633751763375178359920225Shigella sonnei Ss046, complete genome5e-51210BLASTN svgBLASTP svg
NC_011149:11106421110642113231521674Salmonella enterica subsp. enterica serovar Agona str. SL483,2e-44188BLASTN svgBLASTP svg
NC_010468:2406387*2406387242509318707Escherichia coli ATCC 8739, complete genome1e-42182BLASTN svgBLASTP svg
NC_009800:3787320*3787320380985222533Escherichia coli HS, complete genome3e-40174BLASTN svgBLASTP svg
NC_012880:3915500*3915500393874123242Dickeya dadantii Ech703, complete genome2e-32149BLASTN svgBLASTP svg
CU928160:25693225693227863921708Escherichia coli IAI1 chromosome, complete genome2e-25125BLASTN svgBLASTP svg
NC_002695:26123526123528377222538Escherichia coli O157:H7 str. Sakai, complete genome5e-23117BLASTN svgBLASTP svg
NC_002655:26123626123628140820173Escherichia coli O157:H7 EDL933, complete genome5e-23117BLASTN svgBLASTP svg
NC_010473:16076461607646163120923564Escherichia coli str. K-12 substr. DH10B, complete genome2e-22115BLASTN svgBLASTP svg
NC_000913:15170511517051154061423564Escherichia coli K12, complete genome2e-22115BLASTN svgBLASTP svg
AC_000091:15219761521976154430422329Escherichia coli W3110 DNA, complete genome2e-22115BLASTN svgBLASTP svg
NC_008321:39644143964414398859924186Shewanella sp. MR-4, complete genome9e-22113BLASTN svgBLASTP svg
NC_014228:22700002270000231663046631Xenorhabdus nematophila ATCC 19061, complete genome1e-20109BLASTN svgBLASTP svg
NC_007384:27881027881029760818799Shigella sonnei Ss046, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_008253:3941938*3941938399883856901Escherichia coli 536, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_021150:1258780*1258780127736818589Azotobacter vinelandii CA6, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_012560:1260031*1260031129243132401Azotobacter vinelandii DJ, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_004851:15767515767518009922425Shigella flexneri 2a str. 301 plasmid pCP301, complete sequence8e-1693.7BLASTN svgBLASTP svg
NC_006155:42106064210606423298922384Yersinia pseudotuberculosis IP 32953, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_010634:41507634150763417017019408Yersinia pseudotuberculosis PB1/+, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_011901:3072817*3072817309809925283Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, complete8e-1693.7BLASTN svgBLASTP svg
NC_007613:44030704403070442929526226Shigella boydii Sb227, complete genome5e-1487.7BLASTN svgBLASTP svg
AP010958:36273553627355365976432410Escherichia coli O103:H2 str. 12009 DNA, complete genome2e-1385.7BLASTN svgBLASTP svg
AP010958:5090696*5090696512565934964Escherichia coli O103:H2 str. 12009 DNA, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_002655:39195453919545394618926645Escherichia coli O157:H7 EDL933, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_002695:38522333852233387887626644Escherichia coli O157:H7 str. Sakai, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_004337:3590323*35903233952993362671Shigella flexneri 2a str. 301, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_004337:36768736768739153023844Shigella flexneri 2a str. 301, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_004741:36682236682238968922868Shigella flexneri 2a str. 2457T, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_007606:4182188*4182188420162219435Shigella dysenteriae Sd197, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_008258:401786*40178642629524510Shigella flexneri 5 str. 8401, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_010465:52264952264954139418746Yersinia pseudotuberculosis YPIII, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_003143:41057544105754412910623353Yersinia pestis CO92, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_004088:17977517977520177522001Yersinia pestis KIM, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_005810:43811824381182440352322342Yersinia pestis biovar Microtus str. 91001, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_008149:39665863966586398859522010Yersinia pestis Nepal516, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_008150:41408044140804416050419701Yersinia pestis Antiqua, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_010159:12086991208699123266623968Yersinia pestis Angola, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_010660:175200*17520020478429585Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence5e-1177.8BLASTN svgBLASTP svg
NC_002655:46531604653160470328250123Escherichia coli O157:H7 EDL933, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_002655:22647732264773228824723475Escherichia coli O157:H7 EDL933, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_002655:14486051448605147337924775Escherichia coli O157:H7 EDL933, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_002655:10530821053082107777224691Escherichia coli O157:H7 EDL933, complete genome2e-1075.8BLASTN svgBLASTP svg
AP010958:3853082*3853082389809945018Escherichia coli O103:H2 str. 12009 DNA, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_002695:13648331364833138927424442Escherichia coli O157:H7 str. Sakai, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_002695:17946351794635181624421610Escherichia coli O157:H7 str. Sakai, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_002695:3468873*3468873351343744565Escherichia coli O157:H7 str. Sakai, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_015224:40281504028150404848820339Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,2e-1075.8BLASTN svgBLASTP svg
NC_009801:2898426*2898426294876250337Escherichia coli E24377A, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_009801:13926961392696142187429179Escherichia coli E24377A, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_004431:3409389*3409389349493685548Escherichia coli CFT073, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_002695:45841774584177463575951583Escherichia coli O157:H7 str. Sakai, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_007645:6013242*6013242603721023969Hahella chejuensis KCTC 2396, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_010660:864458644510942022976Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence3e-0971.9BLASTN svgBLASTP svg
NC_007941:11319113195659945281Escherichia coli UTI89 plasmid pUTI89, complete sequence3e-0971.9BLASTN svgBLASTP svg
NC_006905:22356072235607226436328757Salmonella enterica subsp. enterica serovar Choleraesuis str1e-0869.9BLASTN svgBLASTP svg
NC_009434:1156834*1156834117518418351Pseudomonas stutzeri A1501, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_015138:11430151143015116543022416Acidovorax avenae subsp. avenae ATCC 19860 chromosome, complete1e-0869.9BLASTN svgBLASTP svg
NC_015740:1017000*1017000104061723618Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete1e-0869.9BLASTN svgBLASTP svg
NC_008060:2913671*2913671294708933419Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence5e-0867.9BLASTN svgBLASTP svg
NC_008542:483761*48376151469930939Burkholderia cenocepacia HI2424 chromosome 1, complete sequence5e-0867.9BLASTN svgBLASTP svg
NC_010508:451184*45118447649825315Burkholderia cenocepacia MC0-3 chromosome 1, complete sequence5e-0867.9BLASTN svgBLASTP svg
NC_010658:1933605*1933605196015326549Shigella boydii CDC 3083-94, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_010658:36226103622610364133018721Shigella boydii CDC 3083-94, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_014323:4619344*4619344465241733074Herbaspirillum seropedicae SmR1 chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_003317:392271*39227141315320883Brucella melitensis 16M chromosome I, complete sequence2e-0765.9BLASTN svgBLASTP svg
NC_004310:1578918*1578918160110922192Brucella suis 1330 chromosome I, complete sequence2e-0765.9BLASTN svgBLASTP svg
NC_004547:2470978*2470978249481623839Erwinia carotovora subsp. atroseptica SCRI1043, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_006932:1596732*1596732161909922368Brucella abortus biovar 1 str. 9-941 chromosome I, complete2e-0765.9BLASTN svgBLASTP svg
NC_007618:1593886*1593886161751623631Brucella melitensis biovar Abortus 2308 chromosome I, complete2e-0765.9BLASTN svgBLASTP svg
NC_008309:11552181155218117824923032Haemophilus somnus 129PT, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010103:1577750*1577750160141623667Brucella canis ATCC 23365 chromosome I, complete sequence2e-0765.9BLASTN svgBLASTP svg
NC_010167:1085106*1085106110813423029Brucella suis ATCC 23445 chromosome II, complete sequence2e-0765.9BLASTN svgBLASTP svg
NC_010498:11179381117938114953131594Escherichia coli SMS-3-5, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010742:1595065*1595065161869323629Brucella abortus S19 chromosome 1, complete sequence2e-0765.9BLASTN svgBLASTP svg
NC_011751:34536833453683351238358701Escherichia coli UMN026 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_015259:73479573479576624731453Polymorphum gilvum SL003B-26A1 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_015857:1609670*1609670163209922430Brucella pinnipedialis B2/94 chromosome chromosome 1, complete2e-0765.9BLASTN svgBLASTP svg
NC_003198:33131433131435709925786Salmonella enterica subsp. enterica serovar Typhi str. CT18,7e-0763.9BLASTN svgBLASTP svg
NC_004631:26159082615908263824422337Salmonella enterica subsp. enterica serovar Typhi Ty2, complete7e-0763.9BLASTN svgBLASTP svg
NC_010102:27623042762304278909926796Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,7e-0763.9BLASTN svgBLASTP svg
NC_011149:30955630955633763728082Salmonella enterica subsp. enterica serovar Agona str. SL483,3e-0661.9BLASTN svgBLASTP svg
NC_011080:33312133312135949426374Salmonella enterica subsp. enterica serovar Newport str. SL254,3e-0661.9BLASTN svgBLASTP svg
NC_007946:47797454779745482809648352Escherichia coli UTI89, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_006511:25405002540500256809927600Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC3e-0661.9BLASTN svgBLASTP svg
CP002797:47757804775780479609920320Escherichia coli NA114, complete genome3e-0661.9BLASTN svgBLASTP svg