Pre_GI Gene

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Host: NC_008542 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008542:483761 Burkholderia cenocepacia HI2424 chromosome 1, complete sequence

Host Lineage: Burkholderia cenocepacia; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This organism (HI2424; BCC1) was isolated as part of a study to find this organism in natural environments. Samples taken from fields that were planted with onions in New York in 1999 and 2000 were examined and it was discovered that isolates were the same as ones that can infect CF patients. This species (genomovar III) is part of the Burkholderia cepacia complex, which consists of 9 closely related species, also known as genomovars. These organisms are commonly found in soil and all are opportunistic pathogens espcially in cystic fibrosis patients.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
483761484549789Sec-independent protein translocase TatC subunitQuickGO ontologyBLASTP
4847554859601206peptidase S1 and S6 chymotrypsinHapQuickGO ontologyBLASTP
485982486728747protein of unknown function DUF34QuickGO ontologyBLASTP
486947487567621ubiquinol-cytochrome c reductase iron-sulfur subunitQuickGO ontologyBLASTP
4875674889491383Cytochrome bb6 N-terminal domainQuickGO ontologyBLASTP
488971489729759cytochrome c1QuickGO ontologyBLASTP
489824490435612Glutathione S-transferase N-terminal domainQuickGO ontologyBLASTP
490507491028522Stringent starvation protein BQuickGO ontologyBLASTP
49104749112276tRNA-ThrQuickGO ontologyBLASTP
4912204922631044phage integrase family proteinQuickGO ontologyBLASTP
492888493622735hypothetical proteinBLASTP
493927494166240hypothetical proteinBLASTP
4941774953161140TrbLVirB6 plasmid conjugal transfer proteinQuickGO ontologyBLASTP
495319495774456hypothetical proteinBLASTP
496114496842729hypothetical proteinBLASTP
497082497807726hypothetical proteinBLASTP
497867498466600hypothetical proteinBLASTP
4995465011621617phage proteinQuickGO ontologyBLASTP
501276502160885hypothetical proteinBLASTP
502224503174951hypothetical proteinBLASTP
503892504095204hypothetical proteinBLASTP
504205505005801extracellular solute-binding protein family 3QuickGO ontologyBLASTP
5053625085533192Rhs element Vgr proteinQuickGO ontologyBLASTP
5086055132604656YD repeat proteinQuickGO ontologyBLASTP
513271513846576hypothetical protein
514382514699318hypothetical proteinBLASTP