Pre_GI: BLASTN Hits

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Query: NC_004578:2797493 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 2797493, End: 2817828, Length: 20336

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_004578:4204235*4204235422545421220Pseudomonas syringae pv. tomato str. DC3000, complete genome02331BLASTN svgBLASTP svg
NC_004578:25604732560473258881228340Pseudomonas syringae pv. tomato str. DC3000, complete genome02323BLASTN svgBLASTP svg
NC_004578:568236*56823659272224487Pseudomonas syringae pv. tomato str. DC3000, complete genome02321BLASTN svgBLASTP svg
NC_004578:21859072185907220851022604Pseudomonas syringae pv. tomato str. DC3000, complete genome02321BLASTN svgBLASTP svg
NC_004578:26715082671508269955228045Pseudomonas syringae pv. tomato str. DC3000, complete genome02319BLASTN svgBLASTP svg
NC_004578:32416183241618326508823471Pseudomonas syringae pv. tomato str. DC3000, complete genome02319BLASTN svgBLASTP svg
NC_004578:4465247*4465247448346018214Pseudomonas syringae pv. tomato str. DC3000, complete genome02319BLASTN svgBLASTP svg
NC_004578:56237835623783565173727955Pseudomonas syringae pv. tomato str. DC3000, complete genome02319BLASTN svgBLASTP svg
NC_004578:63347356334735636397929245Pseudomonas syringae pv. tomato str. DC3000, complete genome02319BLASTN svgBLASTP svg
NC_004578:47813264781326481642335098Pseudomonas syringae pv. tomato str. DC3000, complete genome02317BLASTN svgBLASTP svg
NC_004578:895019*89501992169226674Pseudomonas syringae pv. tomato str. DC3000, complete genome02313BLASTN svgBLASTP svg
NC_004578:35970833597083362009923017Pseudomonas syringae pv. tomato str. DC3000, complete genome02313BLASTN svgBLASTP svg
NC_004578:11537381153738117268818951Pseudomonas syringae pv. tomato str. DC3000, complete genome01899BLASTN svgBLASTP svg
NC_004578:4499143*4499143452348624344Pseudomonas syringae pv. tomato str. DC3000, complete genome1e-122448BLASTN svgBLASTP svg
NC_004578:5336773*5336773541660879836Pseudomonas syringae pv. tomato str. DC3000, complete genome9e-111408BLASTN svgBLASTP svg
NC_015733:864959*86495989931634358Pseudomonas putida S16 chromosome, complete genome2e-102381BLASTN svgBLASTP svg
NC_015733:27201832720183276059940417Pseudomonas putida S16 chromosome, complete genome8e-102379BLASTN svgBLASTP svg
NC_015733:41300004130000414900419005Pseudomonas putida S16 chromosome, complete genome3e-101377BLASTN svgBLASTP svg
NC_015740:36783423678342371659938258Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete3e-98367BLASTN svgBLASTP svg
NC_011901:2202690*2202690223230229613Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, complete5e-97363BLASTN svgBLASTP svg
NC_015740:40724154072415409719824784Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete2e-96361BLASTN svgBLASTP svg
NC_015740:29985002998500301617517676Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete2e-96361BLASTN svgBLASTP svg
NC_015740:34862263486226350909922874Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete3e-95357BLASTN svgBLASTP svg
NC_015740:14191014191016419522286Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete4e-85323BLASTN svgBLASTP svg
NC_010170:44096834409683443529725615Bordetella petrii, complete genome4e-85323BLASTN svgBLASTP svg
NC_010501:36715173671517370459933083Pseudomonas putida W619, complete genome6e-84319BLASTN svgBLASTP svg
NC_009649:16907169074359926693Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN3,4e-82313BLASTN svgBLASTP svg
NC_009434:3611738*36117383748875137138Pseudomonas stutzeri A1501, complete genome6e-81309BLASTN svgBLASTP svg
NC_012560:33039613303961332159917639Azotobacter vinelandii DJ, complete genome2e-80307BLASTN svgBLASTP svg
NC_021150:33039593303959332159917641Azotobacter vinelandii CA6, complete genome2e-80307BLASTN svgBLASTP svg
NC_005773:17688517688520456427680Pseudomonas syringae pv. phaseolicola 1448A, complete genome1e-78301BLASTN svgBLASTP svg
NC_005773:106000*10600015088044881Pseudomonas syringae pv. phaseolicola 1448A, complete genome1e-78301BLASTN svgBLASTP svg
NC_005773:56366065636606566314526540Pseudomonas syringae pv. phaseolicola 1448A, complete genome4e-76293BLASTN svgBLASTP svg
NC_005773:26417152641715266373322019Pseudomonas syringae pv. phaseolicola 1448A, complete genome4e-76293BLASTN svgBLASTP svg
NC_007005:98488*9848813693138444Pseudomonas syringae pv. syringae B728a, complete genome6e-75289BLASTN svgBLASTP svg
NC_005773:32535753253575328174728173Pseudomonas syringae pv. phaseolicola 1448A, complete genome2e-74287BLASTN svgBLASTP svg
NC_005773:38514333851433386927817846Pseudomonas syringae pv. phaseolicola 1448A, complete genome1e-72281BLASTN svgBLASTP svg
NC_009434:69558269558276739471813Pseudomonas stutzeri A1501, complete genome3e-67264BLASTN svgBLASTP svg
NC_021150:2451500*2451500248001928520Azotobacter vinelandii CA6, complete genome1e-45192BLASTN svgBLASTP svg
NC_012560:2451500*2451500248009928600Azotobacter vinelandii DJ, complete genome1e-45192BLASTN svgBLASTP svg
NC_007492:23107932310793233159920807Pseudomonas fluorescens PfO-1, complete genome1e-35159BLASTN svgBLASTP svg
NC_009439:49137674913767493609922333Pseudomonas mendocina ymp, complete genome3e-33151BLASTN svgBLASTP svg
NC_004578:93486793486796406929203Pseudomonas syringae pv. tomato str. DC3000, complete genome8e-28133BLASTN svgBLASTP svg
NC_009439:10117410117412533624163Pseudomonas mendocina ymp, complete genome1e-23119BLASTN svgBLASTP svg
NC_004578:61386696138669616309624428Pseudomonas syringae pv. tomato str. DC3000, complete genome3e-21111BLASTN svgBLASTP svg
NC_009434:60876560876568209973335Pseudomonas stutzeri A1501, complete genome5e-20107BLASTN svgBLASTP svg
NC_015733:42539614253961427610922149Pseudomonas putida S16 chromosome, complete genome2e-19105BLASTN svgBLASTP svg
NC_015733:35958823595882362033824457Pseudomonas putida S16 chromosome, complete genome2e-19105BLASTN svgBLASTP svg
NC_008027:38443553844355388629641942Pseudomonas entomophila L48, complete genome7e-19103BLASTN svgBLASTP svg
NC_008027:4889662*4889662491964529984Pseudomonas entomophila L48, complete genome3e-18101BLASTN svgBLASTP svg
NC_004578:49400004940000496327423275Pseudomonas syringae pv. tomato str. DC3000, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_009512:15181131518113155588037768Pseudomonas putida F1, complete genome4e-1797.6BLASTN svgBLASTP svg
NC_015740:11063311063313313122499Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete2e-1695.6BLASTN svgBLASTP svg
NC_007492:29940362994036302311329078Pseudomonas fluorescens PfO-1, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_020209:49437344943734497459930866Pseudomonas poae RE*1-1-14, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_009439:91853491853494240823875Pseudomonas mendocina ymp, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_008027:55764585576458559851822061Pseudomonas entomophila L48, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_015733:3736104*37361043837697101594Pseudomonas putida S16 chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_013421:11435001143500116948625987Pectobacterium wasabiae WPP163, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_007086:2408837*2408837243103522199Xanthomonas campestris pv. campestris str. 8004, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_007086:19365051936505197809941595Xanthomonas campestris pv. campestris str. 8004, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_007086:15522315522318149426272Xanthomonas campestris pv. campestris str. 8004, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_007086:10321071032107105609923993Xanthomonas campestris pv. campestris str. 8004, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_003902:42520004252000427283320834Xanthomonas campestris pv. campestris str. ATCC 33913, complete6e-1073.8BLASTN svgBLASTP svg
NC_003902:39060113906011393272426714Xanthomonas campestris pv. campestris str. ATCC 33913, complete6e-1073.8BLASTN svgBLASTP svg
NC_003902:29331212933121295986926749Xanthomonas campestris pv. campestris str. ATCC 33913, complete6e-1073.8BLASTN svgBLASTP svg
NC_003902:1858349*1858349191581657468Xanthomonas campestris pv. campestris str. ATCC 33913, complete6e-1073.8BLASTN svgBLASTP svg
NC_003902:15562715562718258326957Xanthomonas campestris pv. campestris str. ATCC 33913, complete6e-1073.8BLASTN svgBLASTP svg
NC_003902:14427051442705146464821944Xanthomonas campestris pv. campestris str. ATCC 33913, complete6e-1073.8BLASTN svgBLASTP svg
NC_007086:35825003582500360369821199Xanthomonas campestris pv. campestris str. 8004, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_007086:46108194610819463110920291Xanthomonas campestris pv. campestris str. 8004, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_007507:11000110003059919600Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid pXCV183,6e-1073.8BLASTN svgBLASTP svg
NC_010688:673454*67345470601432561Xanthomonas campestris pv. campestris, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_010688:32298203229820327221942400Xanthomonas campestris pv. campestris, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_010688:30308733030873307137140499Xanthomonas campestris pv. campestris, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_010688:2781624*2781624283409952476Xanthomonas campestris pv. campestris, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_010688:20526192052619207639423776Xanthomonas campestris pv. campestris, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_007517:30650830650832984723340Geobacter metallireducens GS-15, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_007508:68904668904671040421359Xanthomonas campestris pv. vesicatoria str. 85-10, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_007508:38650003865000390220337204Xanthomonas campestris pv. vesicatoria str. 85-10, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_007508:1446526*1446526147198625461Xanthomonas campestris pv. vesicatoria str. 85-10, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_007508:14189114189117036628476Xanthomonas campestris pv. vesicatoria str. 85-10, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_008027:4280000*4280000430482424825Pseudomonas entomophila L48, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_008563:31192843119284314330124018Escherichia coli APEC O1, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_013956:45797594579759459970619948Pantoea ananatis LMG 20103 chromosome, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_005773:4028500*4028500405209923600Pseudomonas syringae pv. phaseolicola 1448A, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_006155:3805640*3805640384073735098Yersinia pseudotuberculosis IP 32953, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_005810:39172543917254395265235399Yersinia pestis biovar Microtus str. 91001, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_005810:14677721467772150509937328Yersinia pestis biovar Microtus str. 91001, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_004088:3689000*3689000372277733778Yersinia pestis KIM, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_003143:16300001630000167609946100Yersinia pestis CO92, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_003143:1059580*1059580109467535096Yersinia pestis CO92, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_003116:988000988000101010222103Neisseria meningitidis Z2491, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_008027:896000*89600091964923650Pseudomonas entomophila L48, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_008149:28023922802392285367651285Yersinia pestis Nepal516, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_008149:3556999*3556999359064933651Yersinia pestis Nepal516, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_008150:31790331790335159933697Yersinia pestis Antiqua, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_008150:84472784472789009945373Yersinia pestis Antiqua, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010159:17246917246919591323445Yersinia pestis Angola, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010159:31206423120642314771827077Yersinia pestis Angola, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010465:89392189392191618522265Yersinia pseudotuberculosis YPIII, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010634:3720214*3720214375380933596Yersinia pseudotuberculosis PB1/+, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_011901:62571262571266531339602Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, complete2e-0765.9BLASTN svgBLASTP svg
NC_005126:34965834965840029550638Photorhabdus luminescens subsp. laumondii TTO1, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_014972:19823151982315200871426400Desulfobulbus propionicus DSM 2032 chromosome, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_012791:2423466*2423466246659343128Variovorax paradoxus S110 chromosome 1, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_003295:26694802669480269721727738Ralstonia solanacearum GMI1000, complete genome2e-0661.9BLASTN svgBLASTP svg
CP002185:234719*23471925468519967Escherichia coli W, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_014323:81602781602784169625670Herbaspirillum seropedicae SmR1 chromosome, complete genome9e-0660BLASTN svgBLASTP svg
NC_013592:14245601424560145021625657Dickeya dadantii Ech586, complete genome9e-0660BLASTN svgBLASTP svg
NC_008027:55850755850758141922913Pseudomonas entomophila L48, complete genome9e-0660BLASTN svgBLASTP svg
NC_005773:20800020800023117523176Pseudomonas syringae pv. phaseolicola 1448A, complete genome9e-0660BLASTN svgBLASTP svg