Pre_GI Gene

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Host: NC_004578 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004578:5623783 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
562378356260382256DNA topoisomerase IV subunit AQuickGO ontologyBLASTP
56260495626582534hypothetical proteinBLASTP
56265795627571993hypothetical protein
562756856294721905DNA topoisomerase IV subunit BQuickGO ontologyBLASTP
56295625630179618hypothetical proteinBLASTP
56302675631037771SerThr protein phosphataseQuickGO ontologyBLASTP
56311615631547387hypothetical protein
56316825632344663hypothetical proteinBLASTP
56330775633718642hypothetical protein
563391656367682853hypothetical proteinBLASTP
563676556417745010YD repeat proteinQuickGO ontologyBLASTP
56419045642881978ISPssy transposaseQuickGO ontologyBLASTP
56431845643636453hypothetical proteinBLASTP
56436275644244618mutTnudix family proteinQuickGO ontologyBLASTP
56444535645199747lipoprotein putativeQuickGO ontology
564516856464571290cytosinepurineuracilthiamineallantoin permease family proteinQuickGO ontologyBLASTP
564658456484731890thiamine biosynthesis protein ThiCQuickGO ontologyBLASTP
564889756503361440outer membrane efflux protein TolC putativeQuickGO ontologyBLASTP
5650394565173713443-deoxy-D-manno-octulosonic-acid transferaseQuickGO ontologyBLASTP