Pre_GI Gene

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Host: NC_004578 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004578:934867 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
933947934870924hypothetical proteinBLASTP
934867935535669hypothetical proteinBLASTP
935655936464810transposaseIS proteinQuickGO ontologyBLASTP
9364619374831023ISPsy4 transposaseQuickGO ontologyBLASTP
937527937892366hypothetical proteinBLASTP
937908938276369hypothetical proteinBLASTP
938296938445150hypothetical protein
938532938897366hypothetical proteinBLASTP
9398849410681185macrolide efflux protein putativeQuickGO ontologyBLASTP
9420199431191101amidinotransferase family proteinQuickGO ontologyBLASTP
9432069444591254nikkomycin biosynthesis domain proteinQuickGO ontologyBLASTP
9445129457561245hypothetical proteinBLASTP
9462229483392118type III effector HopD1QuickGO ontologyBLASTP
9484559497981344type III effector HopQ1-1QuickGO ontologyBLASTP
949832950149318hypothetical proteinBLASTP
9503879518441458hypothetical proteinBLASTP
951854952603750hypothetical proteinBLASTP
952643953524882hypothetical proteinBLASTP
953552954085534hypothetical protein
9544079602805874type III effector HopR1QuickGO ontologyBLASTP
960352961344993transcriptional regulator LacI familyQuickGO ontologyBLASTP
9614259629061482sucrose-6-phosphate hydrolaseQuickGO ontologyBLASTP
9629249640691146maltosemaltodextrin ABC transporter ATP-binding proteinQuickGO ontologyBLASTP