Pre_GI: BLASTP Hits

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Query: NC_004578:934867:938532 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 938532, End: 938897, Length: 366

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007005:1636875:163790716379071638269363Pseudomonas syringae pv. syringae B728a, complete genomePlasmid conserved hypothetical protein, RAQPRD1e-57221
NC_008463:5313527:533224153322415332600360Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative candidate type III effector Hop protein4e-28123
NC_018080:5091772:516156551615655161858294Pseudomonas aeruginosa DK2 chromosome, complete genometype III effector Hop protein2e-26117
NC_009656:4527457:463650946365094636847339Pseudomonas aeruginosa PA7 chromosome, complete genomehypothetical protein2e-26117
NC_012560:3667177:368687836868783687234357Azotobacter vinelandii DJ, complete genomePlasmid hypothetical protein, RAQPRD3e-26117
NC_021150:3667176:368687736868773687233357Azotobacter vinelandii CA6, complete genomePlasmid hypothetical protein, RAQPRD3e-26117
NC_004129:5373886:543045854304585430811354Pseudomonas fluorescens Pf-5, complete genomeconserved hypothetical protein TIGR016902e-24110
NC_011901:2983555:299367429936742994024351Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completehypothetical protein3e-1787
NC_009138:1974935:202203020220302022410381Herminiimonas arsenicoxydans, complete genomeconserved hypothetical protein; putative signal peptide3e-1684
NC_012691:2614603:266246426624642662841378Tolumonas auensis DSM 9187, complete genomehypothetical protein3e-1684
NC_008344:49039:918229182292193372Nitrosomonas eutropha C91, complete genomehypothetical protein4e-1683.2
NC_016830:3869572:391683139168313917163333Pseudomonas fluorescens F113 chromosome, complete genomehypothetical protein8e-1579
NC_012912:483390:508788508788509165378Dickeya zeae Ech1591, complete genomehypothetical protein1e-1478.6
NC_015422:1876102:189598418959841896349366Alicycliphilus denitrificans K601 chromosome, complete genomehypothetical protein4e-1476.6
NC_010170:1498253:153737015373701537753384Bordetella petrii, complete genomehypothetical protein4e-1476.6
NC_011662:1041725:104579810457981046163366Thauera sp. MZ1T, complete genomeplasmid conserved hypothetical protein RAQPRD1e-1375.5
NC_008825:2525380:255245025524502552797348Methylibium petroleiphilum PM1, complete genomehypothetical protein6e-1372.8
NC_006513:1379735:144300314430031443371369Azoarcus sp. EbN1, complete genomehypothetical protein2e-1271.2
NC_003919:2639080:265462926546292655087459Xanthomonas axonopodis pv. citri str. 306, complete genomehypothetical protein2e-1167.8
NC_020181:3328844:335158333515833351894312Enterobacter aerogenes EA1509E, complete genomeFIG01045568: hypothetical protein6e-1062.8
NC_004547:611178:630094630094630414321Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein7e-1062.8
NC_014228:3391500:342778334277833428112330Xenorhabdus nematophila ATCC 19061, complete genomehypothetical protein1e-0962
NC_013892:3278647:330470633047063305032327Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein3e-0960.8
NC_014228:3534378:353863435386343538963330Xenorhabdus nematophila ATCC 19061, complete genomehypothetical protein2e-0857.8
NC_013892:1483000:149300114930011493330330Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein7e-0855.8
NC_015379:2417312:244701824470182447356339Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Conserved hypothetical protein; putative exported protein1e-0755.5
NC_013716:3512950:353799435379943538320327Citrobacter rodentium ICC168, complete genomehypothetical protein3e-0753.9
NC_009708:4182460:418974241897424190050309Yersinia pseudotuberculosis IP 31758 chromosome, complete genomehypothetical protein6e-0752.8
NC_015566:316340:335541335541335876336Serratia sp. AS12 chromosome, complete genomehypothetical protein1e-0652
NC_015567:313035:335706335706336041336Serratia sp. AS9 chromosome, complete genomehypothetical protein1e-0652