Pre_GI: BLASTP Hits

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Query: NC_004578:934867:950387 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 950387, End: 951844, Length: 1458

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007005:1636875:1638691163869116401541464Pseudomonas syringae pv. syringae B728a, complete genomehypothetical protein0972
NC_009656:4527457:4632866463286646343471482Pseudomonas aeruginosa PA7 chromosome, complete genomeDNA helicase0667
NC_018080:5091772:5157875515787551593561482Pseudomonas aeruginosa DK2 chromosome, complete genomeDNA helicase0664
NC_004129:5373886:5428460542846054299201461Pseudomonas fluorescens Pf-5, complete genomehypothetical protein0659
NC_008463:5313527:5328614532861453300951482Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative helicase0659
NC_012779:346998:3756613756613771331473Edwardsiella ictaluri 93-146, complete genomeDNA helicase2e-113409
NC_009832:4482500:4489655448965544911001446Serratia proteamaculans 568, complete genomehypothetical protein5e-108391
NC_004547:667988:6833326833326847921461Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein3e-107389
NC_016832:4482437:4496610449661044981211512Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,DNA helicase9e-107387
NC_012125:4559990:4574162457416245756731512Salmonella enterica subsp. enterica serovar Paratyphi C strainDNA helicase9e-107387
NC_003198:4513900:4525533452553345270441512Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative DNA helicase9e-107387
NC_004631:4494000:4508342450834245098531512Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative DNA helicase9e-107387
NC_009801:3374501:3376149337614933776781530Escherichia coli E24377A, complete genomehypothetical protein4e-105382
NC_014029:331919:3985423985423999871446Yersinia pestis Z176003 chromosome, complete genomehelicase IV4e-105382
NC_008757:111292:1138381138381155051668Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, completesuperfamily I DNA and RNA helicases-like protein1e-54214
NC_010572:8493946:8522221852222185236901470Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative DNA helicase1e-45184
NC_010572:1:2224022240237091470Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative DNA helicase1e-45184
NC_008255:4043045:4062538406253840643401803Cytophaga hutchinsonii ATCC 33406, complete genomesuperfamily I DNA and RNA helicase7e-43175
NC_016109:1:85068506109172412Kitasatospora setae KM-6054, complete genomeputative helicase6e-40165
NC_016109:8761557:8772362877236287747732412Kitasatospora setae KM-6054, complete genomeputative helicase6e-40165
NC_016603:3475843:3492753349275334942551503Acinetobacter calcoaceticus PHEA-2 chromosome, complete genomeputative DNA helicase7e-36152
NC_010682:1652636:1658054165805416595141461Ralstonia pickettii 12J chromosome 1, complete sequenceputative DNA helicase1e-31137
NC_018679:1738126:1747871174787117499672097Alteromonas macleodii str. 'Balearic Sea AD45' chromosome, completeUvrD/REP helicase4e-29129
NC_014377:1943476:1963225196322519652762052Thermosediminibacter oceani DSM 16646 chromosome, complete genomeUvrD/REP helicase2e-26120