Pre_GI Gene

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Host: NC_009439 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009439:101174 Pseudomonas mendocina ymp, complete genome

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
100296101177882hypothetical proteinBLASTP
1011741047133540ImcF domain-containing proteinQuickGO ontologyBLASTP
104713105441729protein phosphatase 2C domain-containing proteinQuickGO ontologyBLASTP
105438106409972protein kinaseQuickGO ontologyBLASTP
1064341085152082Rhs element Vgr proteinQuickGO ontologyBLASTP
1085661117303165glycoside hydrolase family proteinQuickGO ontologyBLASTP
111727112542816hypothetical protein
112621113043423hypothetical protein
113171113710540hypothetical proteinBLASTP
113794114204411hypothetical proteinBLASTP
1144011154501050hypothetical proteinBLASTP
115461115928468hypothetical proteinBLASTP
115947116483537hypothetical proteinBLASTP
116572116817246transglycosylase-associated proteinQuickGO ontology
116883117647765amino acid ABC transporter periplasmic proteinQuickGO ontologyBLASTP
1177031187881086phosphoribosylaminoimidazole carboxylase ATPase subunitQuickGO ontologyBLASTP
118788119279492phosphoribosylaminoimidazole carboxylase catalytic subunitQuickGO ontologyBLASTP
1195561205781023alcohol dehydrogenaseQuickGO ontologyBLASTP
120683121477795hypothetical protein
121557122549993AraC family transcriptional regulatorQuickGO ontologyBLASTP
1231501241781029histone deacetylase superfamily proteinQuickGO ontologyBLASTP
1242421253361095extracellular solute-binding proteinQuickGO ontologyBLASTP