Pre_GI Gene

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Host: NC_004578 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004578:3597083 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
35970833597547465hypothetical protein
35975253598238714hypothetical proteinBLASTP
359822235994121191dehydrogenase isocitrateisopropylmalate familyQuickGO ontologyBLASTP
36007133601621909transcriptional regulator LysR familyQuickGO ontologyBLASTP
360179436028101017ISPssy transposaseQuickGO ontologyBLASTP
360401036069852976filamentous haemagglutinin family proteinQuickGO ontologyBLASTP
36081363608651516hypothetical proteinBLASTP
36090723609431360ISPsy5 Orf1QuickGO ontologyBLASTP
360944936110021554ISPsy5 transposaseQuickGO ontologyBLASTP
36164133616772360ISPsy5 Orf1QuickGO ontologyBLASTP
361679036183431554ISPsy5 transposaseQuickGO ontologyBLASTP
36196823619849168hypothetical protein