Pre_GI Gene

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Host: NC_004578 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004578:1153738 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
11537381154148411hypothetical proteinBLASTP
11541481154387240hypothetical proteinBLASTP
115453911564281890methyl-accepting chemotaxis proteinQuickGO ontologyBLASTP
11564301156573144hypothetical protein
115681911586991881methyl-accepting chemotaxis proteinQuickGO ontologyBLASTP
11588281159091264hypothetical protein
116278111639021122DnaJ domain proteinQuickGO ontologyBLASTP
116424611663032058methyl-accepting chemotaxis proteinQuickGO ontologyBLASTP
116648011674931014glycosyl transferase group 2 family proteinQuickGO ontologyBLASTP
116757711691361560hypothetical proteinBLASTP
11692801169678399hypothetical proteinBLASTP
11696891170639951lipopolysaccharide biosynthesis proteinQuickGO ontologyBLASTP
11706261171576951glycosyl transferase group 2 family proteinQuickGO ontologyBLASTP
117157311726881116aminotransferase DegTDnrJEryC1StrS familyQuickGO ontologyBLASTP