Pre_GI Gene

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Host: NC_004578 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004578:4204235 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
420423542066312397ATP-dependent protease LaQuickGO ontologyBLASTP
420684242081251284ATP-dependent protease ATP-binding subunitQuickGO ontologyBLASTP
42082324208882651ATP-dependent Clp protease proteolytic subunitQuickGO ontologyBLASTP
420896542102751311trigger factorQuickGO ontologyBLASTP
42107184210834117hypothetical protein
42114134211892480lipoprotein putativeQuickGO ontology
421228842141441857hypothetical protein
42142794215256978ISPssy transposaseQuickGO ontologyBLASTP
42154554215694240hypothetical protein
4216266421635085tRNA-LeuQuickGO ontology
4216407421648276tRNA-HisQuickGO ontology
42169044217758855methylenetetrahydrofolate dehydrogenasemethenyltetrahydrofolate cyclohydrolaseQuickGO ontologyBLASTP
421789342193531461ISPsy6 transposaseQuickGO ontologyBLASTP
421943242212041773ABC transporter periplasmic substrate-binding protein putativeQuickGO ontologyBLASTP
42212904221562273hypothetical proteinBLASTP
42215754222375801ABC transporter permease proteinQuickGO ontologyBLASTP
42223864223252867ABC transporter permease proteinQuickGO ontologyBLASTP
422324542243601116ABC transporter ATP-binding proteinQuickGO ontologyBLASTP
422436042254541095ABC transporter ATP-binding proteinQuickGO ontologyBLASTP