Pre_GI Gene

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Host: NC_004578 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004578:5336773 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
533499953367861788coronamic acid synthetase alloisoleucine ligase componentQuickGO ontologyBLASTP
53367735337702930coronamic acid synthetase chlorinating enzyme component putativeQuickGO ontologyBLASTP
53377125338134423coronamic acid synthetase cyclase component putativeQuickGO ontologyBLASTP
53381445338905762coronamic acid synthetase thioesterase componentQuickGO ontologyBLASTP
53389115339549639alanyl tRNA synthetase-related proteinQuickGO ontologyBLASTP
53395685340179612cmaU proteinQuickGO ontologyBLASTP
53403325340541210BLASTP
53413625341859498hypothetical protein
53418675342136270hypothetical proteinBLASTP
534274853442111464type III effector HopAA1-2QuickGO ontology
53445695344736168hypothetical proteinBLASTP
534508153462531173type III effector HopV1QuickGO ontology
53463385346730393type III chaperone ShcVQuickGO ontology
534711853485241407type III effector HopAO1QuickGO ontologyBLASTP
53490285349336309hypothetical proteinBLASTP
53501025350647546hopDQuickGO ontologyBLASTP
53506885351665978IS52 transposaseQuickGO ontologyBLASTP
535181753534511635BLASTP
535368553551661482type III effector HopG1QuickGO ontologyBLASTP
5355978535606487
53560885356525438BLASTP
53565585357367810transposaseIS proteinQuickGO ontologyBLASTP
535736453583861023ISPsy4 transposaseQuickGO ontologyBLASTP
53585425359036495BLASTP
53598545360336483type III effector HopQ1-2QuickGO ontologyBLASTP
53611155361654540hypothetical protein
53620195362246228hypothetical proteinBLASTP
536272853652502523ATP-dependent helicase HrpBQuickGO ontologyBLASTP
53653365365728393BLASTP
536576153673141554ISPsy5 transposaseQuickGO ontologyBLASTP
53673325367691360ISPsy5 Orf1QuickGO ontologyBLASTP
53677345368084351BLASTP
53681205368296177BLASTP
53685135368935423hypothetical proteinBLASTP
536893953709872049site-specific recombinase phage integrase familyQuickGO ontologyBLASTP
537098753728881902hypothetical proteinBLASTP
537287553743621488site-specific recombinase phage integrase familyQuickGO ontologyBLASTP
537444253765112070ATP-dependent helicase HrpB putativeQuickGO ontologyBLASTP
537894553810412097site-specific recombinase phage integrase family domain proteinQuickGO ontologyBLASTP
53810385381676639hypothetical proteinBLASTP
538167953831031425site-specific recombinase phage integrase familyQuickGO ontologyBLASTP
53831755384062888BLASTP
53841725384651480hypothetical protein
538476653874892724UvrDREP helicase family proteinQuickGO ontologyBLASTP
53880745389039966hypothetical proteinBLASTP
538918453902751092hypothetical proteinBLASTP
53910795391924846hypothetical proteinBLASTP
53921105392484375hypothetical proteinBLASTP
53933625393496135hypothetical protein
53936575393878222hypothetical protein
53949445395078135hypothetical protein
53952435395767525hypothetical proteinBLASTP
53962645396704441DNA-binding proteinQuickGO ontologyBLASTP
539704953990702022hypothetical proteinBLASTP
53991035399777675von Willebrand factor type A domain proteinQuickGO ontologyBLASTP
53997815400563783hypothetical proteinBLASTP
540256554041181554ISPsy5 transposaseQuickGO ontologyBLASTP
54041365404495360ISPsy5 Orf1QuickGO ontologyBLASTP
54045385404846309hypothetical proteinBLASTP
54054565406439984pentapeptide repeat proteinQuickGO ontologyBLASTP
54066515407460810transposaseIS proteinQuickGO ontologyBLASTP
540745754084791023ISPsy4 transposaseQuickGO ontologyBLASTP
54096885410536849hypothetical proteinBLASTP
541063954117691131hypothetical proteinBLASTP
541200954130491041hypothetical proteinBLASTP
54134405413844405ATP-dependent helicase N-terminal domain proteinQuickGO ontologyBLASTP
541389554150731179hypothetical proteinBLASTP
541526854166081341transcriptional regulator GntR familyaminotransferase class IQuickGO ontologyBLASTP