Pre_GI: BLASTP Hits

Some Help

Query: NC_004578:5336773:5349028 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 5349028, End: 5349336, Length: 309

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010676:2658495:267492226749222675215294Burkholderia phytofirmans PsJN chromosome 2, complete sequenceprotein of unknown function DUF13308e-2095.5
NC_014931:2336465:235844523584452358735291Variovorax paradoxus EPS chromosome, complete genomeprotein of unknown function DUF13301e-1995.1
NC_008392:1029134:106026910602691060562294Burkholderia cepacia AMMD chromosome 3, complete sequenceprotein of unknown function DUF13309e-1785.5
NC_015957:7301546:731675773167577317077321Streptomyces violaceusniger Tu 4113 chromosome, complete genomehypothetical protein4e-1683.2
NC_015856:3536441:354289035428903543282393Collimonas fungivorans Ter331 chromosome, complete genomehypothetical protein2e-1270.9
NC_010995:671389:673960673960674262303Cellvibrio japonicus Ueda107, complete genomehypothetical protein3e-1063.9
NC_009952:1680682:170158717015871701880294Dinoroseobacter shibae DFL 12, complete genomehypothetical protein4e-1063.5
NC_017506:1507943:151390115139011514191291Marinobacter adhaerens HP15 chromosome, complete genomehypothetical protein6e-0959.7
NC_011894:6731115:673498567349856735272288Methylobacterium nodulans ORS 2060, complete genomeprotein of unknown function DUF13307e-0959.3
NC_014307:2735934:275005627500562750463408Ralstonia solanacearum CFBP2957 chromosome, complete genomehypothetical protein1e-0858.9
NC_012997:2059092:209708520970852097381297Teredinibacter turnerae T7901, complete genomehypothetical protein8e-0958.9
NC_015276:2552484:256664525666452566944300Marinomonas mediterranea MMB-1 chromosome, complete genomeprotein of unknown function DUF13301e-0858.5
NC_013422:1755875:178547317854731785763291Halothiobacillus neapolitanus c2, complete genomeprotein of unknown function DUF13301e-0858.5
NC_007802:3807500:382461438246143824910297Jannaschia sp. CCS1, complete genomeprotein of unknown function DUF13301e-0858.5
NC_008254:3143770:315666331566633156965303Mesorhizobium sp. BNC1, complete genomeprotein of unknown function DUF13301e-0755.5
NC_009380:1177316:118139311813931181686294Salinispora tropica CNB-440 chromosome, complete genomehypothetical protein4e-0753.1
NC_009050:811358:838725838725838994270Rhodobacter sphaeroides ATCC 17029 chromosome 2, complete sequenceprotein of unknown function DUF13302e-0651.2
NC_013592:2968500:297545129754512975828378Dickeya dadantii Ech586, complete genomeprotein of unknown function DUF13303e-0650.4
NC_008278:1472709:149036314903631490650288Frankia alni ACN14a, complete genomehypothetical protein6e-0649.7
NC_015968:74124:763447634476658315Enterobacter asburiae LF7a chromosome, complete genomehypothetical protein1e-0548.9