Pre_GI: BLASTP Hits

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Query: NC_004578:5336773:5412009 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 5412009, End: 5413049, Length: 1041

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020209:47504:962699626997171903Pseudomonas poae RE*1-1-14, complete genomehypothetical protein5e-53208
NC_012520:529000:5507085507085518321125Rhodococcus opacus B4 plasmid pROB01, complete sequencehypothetical protein8e-2098.2
NC_008699:56500:584315843159273843Nocardioides sp. JS614, complete genomehypothetical protein9e-1994.7
NC_016114:1474000:1480935148093514820591125Streptomyces flavogriseus ATCC 33331 chromosome, complete genomehypothetical protein6e-1478.6
NC_010803:1573849:1572330157233015738561527Chlorobium limicola DSM 245, complete genomeputative transcriptional regulator9e-1168.2
NC_018691:318662:3465643465643477241161Alcanivorax dieselolei B5 chromosome, complete genomehypothetical protein7e-1065.1
NC_015160:63500:745877458775528942Odoribacter splanchnicus DSM 20712 chromosome, complete genomehypothetical protein9e-1064.7
NC_011832:913994:9406669406669421681503Candidatus Methanosphaerula palustris E1-9c, complete genomeputative transcriptional regulator1e-0861.2
NC_016818:859181:8660418660418670661026Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completehypothetical protein3e-0859.7
NC_006155:2116834:2126922212692221279681047Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein2e-0757
NC_018868:4010615:4021432402143240224511020Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomehypothetical protein3e-0756.6
NC_013410:2519441:2546831254683125483061476Fibrobacter succinogenes subsp. succinogenes S85 chromosome,transcriptional regulator6e-0755.5
NC_006512:2211654:2217941221794122189901050Idiomarina loihiensis L2TR, complete genomehypothetical protein7e-0755.1
NC_015422:2858228:288718028871802887626447Alicycliphilus denitrificans K601 chromosome, complete genome8e-0651.6
NC_016812:463000:471365471365472354990Sinorhizobium fredii HH103, complete genomehypothetical protein9e-0651.6