Pre_GI: BLASTP Hits

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Query: NC_004578:5336773:5389184 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 5389184, End: 5390275, Length: 1092

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015567:313035:3227583227583237921035Serratia sp. AS9 chromosome, complete genomehypothetical protein5e-154544
NC_015566:316340:3225933225933236271035Serratia sp. AS12 chromosome, complete genomehypothetical protein5e-154544
NC_017033:1525132:153800815380081538997990Frateuria aurantia DSM 6220 chromosome, complete genomeTaurine catabolism dioxygenase TauD, TfdA family2e-78293
NC_015276:1037862:1042379104237910435151137Marinomonas mediterranea MMB-1 chromosome, complete genomehypothetical protein2e-0963.9