Pre_GI: BLASTP Hits

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Query: NC_004578:5336773:5347118 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 5347118, End: 5348524, Length: 1407

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004578:934867:9462229462229483392118Pseudomonas syringae pv. tomato str. DC3000, complete genometype III effector HopD18e-45181
NC_007507:101887:1145431145431156131071Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid pXCV183,putative tyrosine phosphatase3e-37156
NC_010688:2781624:2788523278852327895931071Xanthomonas campestris pv. campestris, complete genomeprotein-tyrosine-phosphatase putatively secreted as type III effector3e-37156
NC_004578:5336773:535010253501025350647546Pseudomonas syringae pv. tomato str. DC3000, complete genomehopD6e-35149
NC_010723:1014334:101433410143341015260927Clostridium botulinum E3 str. Alaska E43, complete genomeprotein tyrosine phosphatase II superfamily protein3e-26120
NC_015873:2294312:2303846230384623048891044Megasphaera elsdenii DSM 20460, complete genomePTP-like phytase9e-23108
NC_003902:2469500:248082324808232481137315Xanthomonas campestris pv. campestris str. ATCC 33913, completeavirulence protein3e-0963.9
NC_007086:2477040:249810824981082498422315Xanthomonas campestris pv. campestris str. 8004, complete genomeavirulence protein3e-0963.9