Pre_GI Gene

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Host: NC_004578 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004578:2560473 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
256047325619961524CHASE domainPAS domain proteinQuickGO ontologyBLASTP
25619862562957972sensory boxGGDEF domain proteinQuickGO ontologyBLASTP
256300125644671467D-alanyl-D-alanine carboxypeptidaseQuickGO ontologyBLASTP
25647942565138345hypothetical proteinBLASTP
256524425666771434sensor histidine kinaseresponse regulatorQuickGO ontologyBLASTP
256671625683201605hypothetical proteinBLASTP
25683862568700315hypothetical protein
25697532570166414resolvase putativeQuickGO ontologyBLASTP
257188725731401254hypothetical proteinBLASTP
257365425746761023ISPsy4 transposaseQuickGO ontologyBLASTP
25746732575482810transposaseIS proteinQuickGO ontologyBLASTP
257593625777261791hypothetical protein
25778332578810978ISPssy transposaseQuickGO ontologyBLASTP
25800972580357261hypothetical protein
258112025833752256extracellular solute-binding proteinsensory box proteinQuickGO ontologyBLASTP
25836512584628978ISPssy transposaseQuickGO ontologyBLASTP
25856062585998393response regulatorQuickGO ontologyBLASTP
258625025875811332deoxyguanosinetriphosphate triphosphohydrolaseQuickGO ontologyBLASTP
25876852588152468hypothetical protein
25881012588493393hypothetical proteinBLASTP
25884982588812315hypothetical proteinBLASTP