Pre_GI Gene

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Host: NC_004578 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004578:3241618 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
32416183242358741lipoprotein putativeQuickGO ontologyBLASTP
32423663242866501lipoprotein putativeQuickGO ontologyBLASTP
324292232441931272hypothetical protein
3244444324454299hypothetical protein
324619532475561362methyl-accepting chemotaxis proteinQuickGO ontologyBLASTP
32480153248374360ISPsy5 Orf1QuickGO ontologyBLASTP
32498393250816978ISPssy transposaseQuickGO ontologyBLASTP
32509233251069147hypothetical protein
32513283251441114hypothetical protein
32514383251683246hypothetical proteinBLASTP
325166132530551395UDP-glucose 6-dehydrogenaseQuickGO ontologyBLASTP
3253146325324499hypothetical protein
32533643254194831PAP2 superfamily proteinQuickGO ontologyBLASTP
325444532568502406lectin repeat domain proteinQuickGO ontologyBLASTP
325707632580951020hypothetical proteinBLASTP
325841632600201605sensory box histidine kinaseresponse regulatorQuickGO ontologyBLASTP
326016232613041143hypothetical proteinBLASTP
326130732624881182UDP-galactopyranose mutaseQuickGO ontologyBLASTP
326247632636601185hypothetical proteinBLASTP
326406032650881029UDP-glucose 4-epimeraseQuickGO ontologyBLASTP