Pre_GI Gene

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Host: NC_009439 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009439:918534 Pseudomonas mendocina ymp, complete genome

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
9185349207652232TonB-dependent receptorQuickGO ontologyBLASTP
920995921738744hypothetical proteinBLASTP
921838922137300hypothetical proteinBLASTP
9222139228546423-beta hydroxysteroid dehydrogenaseisomeraseQuickGO ontologyBLASTP
922954923841888LysR family transcriptional regulatorQuickGO ontologyBLASTP
923928924815888protein of unknown function RIO1QuickGO ontologyBLASTP
924888925319432MerR family transcriptional regulatorQuickGO ontologyBLASTP
925356925616261hypothetical proteinBLASTP
925713926057345hypothetical proteinBLASTP
926745927086342hypothetical protein
9273599295392181lipase class 3QuickGO ontologyBLASTP
929546930211666hypothetical proteinBLASTP
930286931029744hypothetical proteinBLASTP
931026931928903hypothetical proteinBLASTP
9319259340092085Rhs element Vgr proteinQuickGO ontologyBLASTP
9341439365152373heavy metal translocating P-type ATPaseQuickGO ontologyBLASTP
936580936969390hypothetical protein
937054937305252heavy metal transportdetoxification proteinQuickGO ontologyBLASTP
937355937975621TetR family transcriptional regulatorQuickGO ontologyBLASTP
9381149392651152RND family efflux transporter MFP subunitQuickGO ontologyBLASTP
9392719424083138hydrophobeamphiphile efflux-1 HAE1 family proteinQuickGO ontologyBLASTP