Pre_GI Gene

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Host: NC_004578 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004578:568236 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
5682365693121077hypothetical proteinBLASTP
569661569945285DNA-binding proteinQuickGO ontologyBLASTP
5699455711711227hypothetical proteinBLASTP
5711965723261131Fic family proteinQuickGO ontologyBLASTP
5725735738711299peptidase M20M25M40 familyQuickGO ontologyBLASTP
574042574635594lipoprotein putativeQuickGO ontologyBLASTP
574681574893213hypothetical protein
5753755773271953hypothetical proteinBLASTP
577324578211888hypothetical proteinBLASTP
578208579008801hypothetical proteinBLASTP
579598580119522hypothetical proteinBLASTP
580669581433765type IV secretion system protein putativeQuickGO ontologyBLASTP
581917582171255lipoprotein putativeQuickGO ontologyBLASTP
583081584058978ISPssy transposaseQuickGO ontologyBLASTP
5847805860211242site-specific recombinase phage integrase familyQuickGO ontologyBLASTP
5861005885892490sensory boxGGDEF domainEAL domain proteinQuickGO ontologyBLASTP
5888465906961851RNA polymerase sigma factorQuickGO ontologyBLASTP
5907645927221959DNA primaseQuickGO ontologyBLASTP